Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53878 | Canola | mitochondrion | 25.58 | 22.92 |
| AT3G60960.1 | Thale cress | mitochondrion | 67.44 | 21.59 |
| AT5G28380.1 | Thale cress | cytosol | 52.71 | 17.44 |
| AT5G28340.1 | Thale cress | cytosol | 51.94 | 15.4 |
| CDY10671 | Canola | mitochondrion | 44.19 | 14.29 |
| CDY37773 | Canola | mitochondrion | 45.74 | 13.88 |
| CDX80067 | Canola | mitochondrion | 44.96 | 13.33 |
| CDY25062 | Canola | mitochondrion | 34.88 | 12.4 |
| CDY33104 | Canola | mitochondrion | 34.88 | 12.23 |
| CDX95653 | Canola | mitochondrion | 33.33 | 10.72 |
| CDX71714 | Canola | cytosol | 20.16 | 10.7 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 30.23 | 10.34 |
| CDX80068 | Canola | mitochondrion | 39.53 | 9.64 |
| CDY37774 | Canola | mitochondrion | 39.53 | 9.27 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 38.76 | 8.09 |
| CDY31037 | Canola | mitochondrion | 39.53 | 6.32 |
| CDX93444 | Canola | mitochondrion | 37.21 | 6.31 |
| CDX94912 | Canola | mitochondrion | 37.98 | 5.92 |
| CDY34898 | Canola | mitochondrion | 38.76 | 5.85 |
| CDY20645 | Canola | mitochondrion | 37.21 | 5.85 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 36.43 | 5.68 |
| Zm00001d032900_P001 | Maize | mitochondrion | 34.88 | 5.54 |
| CDY65945 | Canola | cytosol | 28.68 | 5.45 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 35.66 | 5.39 |
| OQU93028 | Sorghum | mitochondrion | 35.66 | 5.26 |
| Os05t0365500-01 | Rice | nucleus | 35.66 | 5.05 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 36.43 | 5.01 |
| TraesCS2D01G061700.1 | Wheat | golgi | 36.43 | 4.95 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 36.43 | 4.64 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 35.66 | 4.56 |
| OQU78362 | Sorghum | cytosol | 22.48 | 4.23 |
| CDY00193 | Canola | plastid | 17.05 | 3.79 |
| CDX86985 | Canola | mitochondrion | 17.05 | 3.74 |
| CDY08118 | Canola | plastid | 15.5 | 3.36 |
| CDX83077 | Canola | mitochondrion, plastid | 16.28 | 3.34 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 15.5 | 3.18 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 19.38 | 3.12 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 17.05 | 2.52 |
| CDY05913 | Canola | cytosol | 8.53 | 2.26 |
| CDY53879 | Canola | cytosol | 0.78 | 0.56 |
| CDX95410 | Canola | cytosol | 0.0 | 0.0 |
| CDY05914 | Canola | cytosol | 0.0 | 0.0 |
| CDY21873 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY25066 | EnsemblPlantsGene:GSBRNA2T00028906001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFscan:PS51375 | ProteinID:CDY25066 | ProteinID:CDY25066.1 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| UniParc:UPI0004EE0514 | UniProt:A0A078GI86 | MapMan:35.1 | : | : | : |
Description
BnaC06g18080DBnaC06g18080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI86]
Coordinates
chrLK032168:+:108795..109242
Molecular Weight (calculated)
14478.4 Da
IEP (calculated)
4.868
GRAVY (calculated)
0.012
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGLSNLDKA VEYSHHAVSE KYRFKRDTVF ICNSVIGAMC DAKRYEEAIS LFNYFFNESQ TLPNMLSCNL IIKAHCDQGC LDDALDLFSH IVIDGRLSPG
101: VDTYVILTKA LVDAKRLDEA CGCWMQGDT
101: VDTYVILTKA LVDAKRLDEA CGCWMQGDT
001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.