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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 8
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25066 Canola cytosol 21.59 67.44
AT5G28380.1 Thale cress cytosol 56.58 58.46
AT5G28340.1 Thale cress cytosol 59.06 54.71
AT3G60980.1 Thale cress mitochondrion 31.02 30.34
GSMUA_Achr10P... Banana mitochondrion, plastid 21.34 13.92
AT1G10270.1 Thale cress mitochondrion 26.8 11.83
TraesCS2A01G524300.1 Wheat mitochondrion 20.6 10.04
TraesCS2D01G527300.1 Wheat mitochondrion 20.6 9.72
Os05t0365500-01 Rice nucleus 21.59 9.55
Zm00001d032900_P001 Maize mitochondrion 18.61 9.23
OQU93028 Sorghum mitochondrion 19.6 9.03
TraesCS2A01G063500.1 Wheat mitochondrion 20.6 8.84
TraesCS2D01G061700.1 Wheat golgi 20.6 8.74
TraesCS2B01G076200.1 Wheat golgi, nucleus, plastid 20.6 8.19
TraesCS2B01G554300.1 Wheat nucleus 20.35 8.13
OQU78362 Sorghum cytosol 12.16 7.15
AT3G49240.1 Thale cress cytosol, plastid 10.42 6.68
HORVU2Hr1G011400.1 Barley cytosol 11.66 5.87
HORVU2Hr1G011350.4 Barley cytosol, mitochondrion 11.17 5.15
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:825268UniProt:A0A178V6P2ProteinID:AEE80130.1ProteinID:ANM63862.1
ProteinID:ANM63863.1ArrayExpress:AT3G60960EnsemblPlantsGene:AT3G60960RefSeq:AT3G60960TAIR:AT3G60960RefSeq:AT3G60960-TAIR-G
EnsemblPlants:AT3G60960.1TAIR:AT3G60960.1Unigene:At.70339EMBL:BX824462ProteinID:CAB94132.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004518GO:GO:0004519GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451GO:GO:0009507GO:GO:0009536
GO:GO:0009987GO:GO:0016787GO:GO:0031425GO:GO:0090305InterPro:IPR002885InterPro:IPR011990
RefSeq:NP_001325929.1RefSeq:NP_001325930.1RefSeq:NP_191655.2ProteinID:OAP01401.1PFAM:PF01535PO:PO:0000293
PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF393InterPro:Pentatricopeptide_repeatUniProt:Q9LEX6SUPFAM:SSF48452
TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI000034F041SEG:seg::
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
Coordinates
chr3:+:22535676..22538684
Molecular Weight (calculated)
45508.5 Da
IEP (calculated)
6.620
GRAVY (calculated)
0.017
Length
403 amino acids
Sequence
(BLAST)
001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.