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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY65945 Canola cytosol 60.35 81.15
CDY34898 Canola mitochondrion 73.6 78.69
Bra031706.1-P Field mustard mitochondrion 73.38 78.45
CDX94912 Canola mitochondrion 70.76 78.02
Bra019952.1-P Field mustard mitochondrion 69.77 77.78
CDX93444 Canola mitochondrion 64.4 77.27
CDY20645 Canola mitochondrion 66.48 73.93
CDY31037 Canola mitochondrion 56.3 63.69
Bra018451.1-P Field mustard mitochondrion 56.19 63.57
VIT_12s0035g01700.t01 Wine grape mitochondrion 38.01 55.34
GSMUA_Achr10P... Banana mitochondrion, plastid 30.89 45.63
Zm00001d032900_P001 Maize mitochondrion 31.54 35.42
Solyc01g103160.2.1 Tomato nucleus 36.69 34.39
TraesCS2A01G524300.1 Wheat mitochondrion 31.0 34.22
Os05t0365500-01 Rice nucleus 33.63 33.7
OQU93028 Sorghum mitochondrion 32.09 33.49
TraesCS2D01G527300.1 Wheat mitochondrion 30.56 32.67
PGSC0003DMT400064089 Potato mitochondrion, plastid 36.91 32.53
TraesCS2A01G063500.1 Wheat mitochondrion 31.76 30.88
TraesCS2D01G061700.1 Wheat golgi 31.98 30.74
TraesCS2B01G076200.1 Wheat golgi, nucleus, plastid 32.97 29.68
TraesCS2B01G554300.1 Wheat nucleus 32.53 29.46
OQU78362 Sorghum cytosol 22.02 29.34
AT3G60960.1 Thale cress mitochondrion 11.83 26.8
AT3G49240.1 Thale cress cytosol, plastid 17.74 25.76
HORVU2Hr1G011400.1 Barley cytosol 22.45 25.59
HORVU2Hr1G011350.4 Barley cytosol, mitochondrion 23.11 24.14
AT3G60980.1 Thale cress mitochondrion 10.19 22.57
AT5G28380.1 Thale cress cytosol 9.53 22.31
AT5G28340.1 Thale cress cytosol 10.08 21.15
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:837566UniProt:A0A178W2P4ProteinID:AAD32877.1ProteinID:AEE28560.1
ArrayExpress:AT1G10270EnsemblPlantsGene:AT1G10270RefSeq:AT1G10270TAIR:AT1G10270RefSeq:AT1G10270-TAIR-GEnsemblPlants:AT1G10270.1
TAIR:AT1G10270.1Unigene:At.24665GO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005739GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009451GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009987GO:GO:0016787
GO:GO:0051301GO:GO:0090305Symbol:GRP23InterPro:IPR002885InterPro:IPR011990InterPro:IPR019734
RefSeq:NP_172498.1ProteinID:OAP12727.1PFAM:PF01535PFAM:PF12854PO:PO:0000013PO:PO:0000014
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007057PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009049PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025074PO:PO:0025281PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF393InterPro:Pentatricopeptide_repeatUniProt:Q9SY69SMART:SM00028SUPFAM:SSF48452SUPFAM:SSF81901
TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00000A89C6SEG:seg:
Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
Coordinates
chr1:+:3363432..3366493
Molecular Weight (calculated)
102099.0 Da
IEP (calculated)
7.668
GRAVY (calculated)
-0.781
Length
913 amino acids
Sequence
(BLAST)
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.