Factsheet for Bra031706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015218.1-P
Bra039839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Bra015218.1-P	AT2G15400.1	16489121
AT1G10270.1	Bra039839.1-P	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34898	Canola	mitochondrion	99.77	99.77
Bra019952.1-P	Field mustard	mitochondrion	74.94	78.14
AT1G10270.1	Thale cress	mitochondrion	78.45	73.38
Bra018451.1-P	Field mustard	mitochondrion	60.07	63.57
VIT_12s0035g01700.t01	Wine grape	mitochondrion	39.34	53.59
GSMUA_Achr10P...	Banana	mitochondrion, plastid	32.2	44.5
KRH26275	Soybean	mitochondrion	38.99	42.05
KRH06034	Soybean	mitochondrion	39.7	39.19
Zm00001d032900_P001	Maize	mitochondrion	33.14	34.81
TraesCS2A01G524300.1	Wheat	mitochondrion	33.14	34.22
Solyc01g103160.2.1	Tomato	nucleus	38.41	33.68
OQU93028	Sorghum	mitochondrion	33.61	32.8
TraesCS2D01G527300.1	Wheat	mitochondrion	32.79	32.79
Os05t0365500-01	Rice	nucleus	34.78	32.6
PGSC0003DMT400064089	Potato	mitochondrion, plastid	38.41	31.66
TraesCS2D01G061700.1	Wheat	golgi	34.43	30.95
TraesCS2A01G063500.1	Wheat	mitochondrion	33.61	30.56
OQU78362	Sorghum	cytosol	23.89	29.78
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	34.66	29.19
TraesCS2B01G554300.1	Wheat	nucleus	34.31	29.07
Bra019587.1-P	Field mustard	cytosol	16.86	25.62
Bra017999.1-P	Field mustard	cytosol	16.74	25.35
HORVU2Hr1G011400.1	Barley	cytosol	23.3	24.84
Bra029944.1-P	Field mustard	mitochondrion, plastid	18.74	24.77
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	24.36	23.8
Bra000388.1-P	Field mustard	cytosol	7.49	20.65
Bra004488.1-P	Field mustard	cytosol	9.72	20.19
Bra004487.1-P	Field mustard	mitochondrion	11.12	17.96

Protein Annotations

EnsemblPlants:Bra031706.1	EnsemblPlants:Bra031706.1-P	EnsemblPlantsGene:Bra031706	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI00025431BF	UniProt:M4ESC8	MapMan:35.1	:	:

Description

AT1G10270 (E=4e-288) GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding

Coordinates

chrA09:-:35142368..35144932

Molecular Weight (calculated)

95359.8 Da

IEP (calculated)

8.801

GRAVY (calculated)

-0.800

Length

854 amino acids

Sequence
(BLAST)

001: MSLRHLLRRS SPLLHRLSSS PIAISHIQQR LYTISISPPN ESPDTTNQDS PPITFPQSPL RTTSFSSAEE AAAERRRRKR RLRIEPPLHA LRRDPSSPPP
101: KRDPNAPRLP DSTSSLVGAR LNLHNRVQSL TRASDLDAAS KLARQSVYSS TRPTVFTCNA IVAAMYRSKR YADSISLFEY FFKQSNIVPN VVSYNQIINA
201: HCDEGHVEEA LEVYRYILAN SPFAPSSVTY RHLTKGLVQA GRIGEAVSLV REMLSKGQAA DSVVYSNVIR GYLDLGDLDK ANEFFDELKS KCTVYDGIVH
301: GTFMEYWFEK GNDKEGMESY RSLLDKKFRM HPHTGNALLE VFLKYGKKSE AWGLFNEMLD NHTPPNILSV NSETISIMVN ECFKMGEFNE AIETFKKVGR
401: NPTSRPFVMD YLGYSNIVTR FCEHGMLPEA ERFFAESVGK SLPPDAPSHR AMIDAYLKAE RVEDAVKMLN RMVDVNLRVV AEFGTRVFGE LIRNGKVKES
501: AEVLSKMGER EPKPDPSVYD VVGRGLCEGD ALDQAKDIVG QMVGYGVGVT PVLREFLIET FEKAGRREEI EKTLNTVNRP VRNSGQSGYT APRVPGVLGA
601: TSAAPQQPRD RAPWTSHGTS LPNSGGANGT AGQTSGGTYK ANNSQNTSWS NTSVNQQQKP WSNQTPVQPS PSWSSQGPGY QQQQSWSQQP GWSSPSGHQQ
701: SWATQTTGQQ QQWANQTPSQ QQQWSNQNTG HQQSWANQTT GQHQQWTNQN TGHQQYQNTG HHQQPWGNQT PGQQQQWTNQ TAGQHSAWTG QQQPWSNQTA
801: TPQQSQWSNP SSGQVANQAP WSNSGNSHFP QQQEPESSHG WQDGEEKKVV ESSK

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.