CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01700.t01	Wine grape	mitochondrion	49.87	63.0
KRH06034	Soybean	mitochondrion	68.56	62.77
GSMUA_Achr10P...	Banana	mitochondrion, plastid	38.51	49.35
Bra018451.1-P	Field mustard	mitochondrion	41.54	40.77
Bra019952.1-P	Field mustard	mitochondrion	41.16	39.8
Bra031706.1-P	Field mustard	mitochondrion	42.05	38.99
TraesCS2A01G524300.1	Wheat	mitochondrion	39.9	38.21
Zm00001d032900_P001	Maize	mitochondrion	39.14	38.13
Solyc01g103160.2.1	Tomato	nucleus	44.95	36.55
TraesCS2D01G527300.1	Wheat	mitochondrion	38.13	35.36
OQU93028	Sorghum	mitochondrion	39.02	35.31
Os05t0365500-01	Rice	nucleus	39.77	34.58
PGSC0003DMT400064089	Potato	mitochondrion, plastid	45.08	34.46
OQU78362	Sorghum	cytosol	28.79	33.28
TraesCS2A01G063500.1	Wheat	mitochondrion	38.64	32.59
TraesCS2D01G061700.1	Wheat	golgi	38.89	32.42
TraesCS2B01G554300.1	Wheat	nucleus	39.52	31.05
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	38.64	30.18
HORVU2Hr1G011400.1	Barley	cytosol	28.03	27.72
KRH64444	Soybean	mitochondrion	21.34	26.78
KRH53501	Soybean	mitochondrion	20.96	26.27
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	28.28	25.63
CDY25062	Canola	mitochondrion	9.6	20.94
AT3G60980.1	Thale cress	mitochondrion	10.86	20.87
CDY33104	Canola	mitochondrion	9.6	20.65
CDX71714	Canola	cytosol	5.18	16.87

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100802924	MapMan:35.1	EMBL:ACUP02007703	EnsemblPlantsGene:GLYMA_12G164700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LVA6	EnsemblPlants:KRH26275	ProteinID:KRH26275
ProteinID:KRH26275.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002951F87	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:31903959..31906759

Molecular Weight (calculated)

87693.4 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.448

Length

792 amino acids

Sequence
(BLAST)

001: MSVYRLLLRR VAVARPMFSL TQTRSYAFSS AEEAAAERRR RKRRLRIEPP LNAIRPPPQQ GPPRDPNAPR LPDSTSALVG PRLSLHNRVQ SLIRAGDLEA
101: ASAIARHSVF SVTRPTVFTC NAIIAAMYRS GRYEEAIALF HFFFKQSNIV PNIVSYNNVI NTHCDQGRVD VALEVYRHVV ANAPFSPSPV TYRHLTKGLI
201: HSERISEALD LLREMLSKGH GADSLVYNNL ISGFLHLDNF DKAIELFDEL KERCLVYDGV VNATFMEWFF SKGRDKDAMD SYRSLLDRQF RMTPATCNVL
301: LEALLNHSKT SEAWSLFDNM LDNHTPPNFQ AVNSDSFNIM VNHCFKLGNF ELALSTFKKV GSKPNSKPFA MDVAGYNNII ARFCENAMLS QAETLFEELC
401: SKSLSPDVPT HRTLIEVYLR MDRIDDALRI FHRMVDSGLR VVATFGNTVF HELIKNGKAI DCAQILSKMG EKDPKPDPTC YEVVIKGLCA DGLLDKSREL
501: LDEVMRYGVG VTSSLREFVT EVFKKAGRGD EIERLLDMNR FAYTPRPSPP RPAYCPPLVR SPSQMAAGAA HSPPSGFPTR MAAQQHPTPP PQMTGARYPP
601: SQMAGAAHNP PSGAPHQVFE HQRPPLPSQM TGMHQPSWGL SPPMTGPHPG SSPNTGQPYH PNASEHHPHV SRVAPQMTAQ HYTPSGPSPQ MAGHQPYGTP
701: RGPQQWAERQ YPPSGLSPPM AGQHHPLAGP TPPMSGWSIP SNGASAKMSP PYHISAGPSS QVTGPYHPSS STPPHFEESH QQQSEVPEQV AA

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.