Factsheet for VIT_12s0035g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0180g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	VIT_03s0180g00050.t01	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion, plastid	52.31	53.07
KRH26275	Soybean	mitochondrion	63.0	49.87
KRH06034	Soybean	mitochondrion	62.68	45.43
CDX93444	Canola	mitochondrion	49.76	41.0
CDY34898	Canola	mitochondrion	53.75	39.46
Bra031706.1-P	Field mustard	mitochondrion	53.59	39.34
CDY31037	Canola	mitochondrion	50.56	39.28
Bra018451.1-P	Field mustard	mitochondrion	50.4	39.16
CDX94912	Canola	mitochondrion	51.67	39.13
CDY20645	Canola	mitochondrion	51.2	39.1
Bra019952.1-P	Field mustard	mitochondrion	50.4	38.58
AT1G10270.1	Thale cress	mitochondrion	55.34	38.01
Zm00001d032900_P001	Maize	mitochondrion	48.8	37.64
Solyc01g103160.2.1	Tomato	nucleus	57.89	37.27
CDY65945	Canola	cytosol	39.39	36.38
PGSC0003DMT400064089	Potato	mitochondrion, plastid	58.53	35.42
OQU93028	Sorghum	mitochondrion	49.12	35.2
TraesCS2A01G524300.1	Wheat	mitochondrion	46.09	34.95
Os05t0365500-01	Rice	nucleus	50.24	34.58
TraesCS2D01G527300.1	Wheat	mitochondrion	46.09	33.84
OQU78362	Sorghum	cytosol	34.77	31.82
TraesCS2A01G063500.1	Wheat	mitochondrion	47.05	31.42
TraesCS2D01G061700.1	Wheat	golgi	47.05	31.05
VIT_16s0098g01840.t01	Wine grape	plastid	30.46	29.25
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	47.21	29.19
TraesCS2B01G554300.1	Wheat	nucleus	46.25	28.77
HORVU2Hr1G011400.1	Barley	cytosol	32.06	25.09
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	32.22	23.11
AT3G60980.1	Thale cress	mitochondrion	13.72	20.87
CDY25062	Canola	mitochondrion	11.8	20.39
CDY33104	Canola	mitochondrion	11.8	20.11
CDX71714	Canola	cytosol	6.86	17.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255686	wikigene:100255686	MapMan:35.1	EMBL:AM427389	ProteinID:CAN60262
ProteinID:CAN60262.1	ProteinID:CCB55011	ProteinID:CCB55011.1	UniProt:F6HK08	EMBL:FN595990	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016787
GO:GO:0051301	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100255686	wikigene:LOC100255686
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGR:TC54957	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001985AE2	ArrayExpress:VIT_12s0035g01700
EnsemblPlantsGene:VIT_12s0035g01700	EnsemblPlants:VIT_12s0035g01700.t01	RefSeq:XP_002267973	RefSeq:XP_002267973.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:21796268..21801830

Molecular Weight (calculated)

70055.4 Da

IEP (calculated)

8.864

GRAVY (calculated)

-0.335

Length

627 amino acids

Sequence
(BLAST)

001: MSLHRLLLRS LRRSSSLTAA ATSTSQTLIH QQPQPTLVPI RTFAFSSAEE AAAERRRRKR RLRIEPPLHA LRRDPSAPRP RPDPNAPRLP DSTSALVGPR
101: LNLHNRVQSL IRAGDLDLAS ATARQSVFSN TRPTVFTCNA IIAAMYRNKR FDDAIALFQF FFNQSNIVPN IVSYNVLINT HCDAGRVDVG LDIYRHILAN
201: APFSPSPVTY RHLTKGLIDS GRIGEAVDLL REMLNKGHGA DSLVYNNLIS GFLNLENEAK AIELFDELKE RCLVYDGVVN GTFMDWYFTK GREKCAMDSY
301: KSLLDRQFRM TPVTCNALLE VLLKHDKKAE AWALFDQMLD NHTPPNFQAV NSDSFSVMVN ECVKLGKFTE AIEVFKKVGK KQGSKPFAMD VAGYNNIIAR
401: FCENGLLSEA EQLFGELSTK SLTPDVNIYR TFIEAYFGME RADDALQMFN RFVDSGLRVI VSFANKVFDE LVNKGKAGEC VPVLTKMGEK DPKPDPTTYE
501: IVIKGLCKER LFDASRDLMG QMVRYNIGVT PSLREFVVEA FGKEGRSEEI ERLLEANRPG FGAYWPPSGP PRMAGPPRMA GPPRMAGPPQ MAEPPRMAGP
601: PQMAEPPRMA ESSRMEEPPQ MAGQAST

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.