Factsheet for VIT_03s0180g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0035g01700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	VIT_12s0035g01700.t01	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50412	Soybean	nucleus	87.74	87.46
KRG89365	Soybean	nucleus	86.79	86.25
Solyc05g010300.2.1	Tomato	nucleus	84.59	84.33
CDY62312	Canola	nucleus	83.33	83.33
AT2G15430.1	Thale cress	nucleus	83.33	83.07
Bra015218.1-P	Field mustard	nucleus	82.39	82.13
CDY36631	Canola	nucleus	82.39	82.13
Bra039839.1-P	Field mustard	nucleus	82.39	81.62
CDY37227	Canola	nucleus	82.39	81.62
CDX71219	Canola	nucleus	67.3	75.89
AT2G15400.1	Thale cress	nucleus	76.1	75.86
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	74.84	75.32
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	73.9	74.6
Os09t0110400-02	Rice	nucleus	77.04	74.24
TraesCS7D01G509400.1	Wheat	nucleus	73.27	73.97
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	76.73	73.94
TraesCS5B01G158300.1	Wheat	nucleus	75.47	72.51
TraesCS5A01G160900.1	Wheat	plastid	74.84	71.9
EER98576	Sorghum	nucleus	73.58	71.34
HORVU7Hr1G115770.2	Barley	nucleus	35.53	66.86
Zm00001d005295_P001	Maize	extracellular	73.58	66.86
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	74.53	65.29
HORVU5Hr1G050250.6	Barley	nucleus	74.53	64.23
GSMUA_Achr3P13120_001	Banana	cytosol	27.04	61.43
CDX71220	Canola	nucleus	70.75	50.68
GSMUA_Achr3P13130_001	Banana	cytosol	16.67	46.09
VIT_19s0015g00780.t01	Wine grape	cytosol	28.93	24.73

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100258926	wikigene:100258926	MapMan:15.1.6.1	Gene3D:2.170.120.12
Gene3D:3.30.1360.270	EMBL:AM445921	ProteinID:CAN60923	ProteinID:CAN60923.1	ProteinID:CCB62358	ProteinID:CCB62358.1
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	UniProt:F6I5Z0	EMBL:FN596754	GO:GO:0001055
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0006139	GO:GO:0006351	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643
EntrezGene:LOC100258926	wikigene:LOC100258926	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800
PANTHER:PTHR11800:SF2	InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
TIGR:TC53696	UniParc:UPI00015C8FC9	ArrayExpress:VIT_03s0180g00050	EnsemblPlantsGene:VIT_03s0180g00050	EnsemblPlants:VIT_03s0180g00050.t01	unigene:Vvi.1797
RefSeq:XP_002285322	RefSeq:XP_002285322.1	RefSeq:XP_019074554.1	:	:	:

Description

No Description!

Coordinates

chr3:-:5981525..5989159

Molecular Weight (calculated)

35362.9 Da

IEP (calculated)

4.474

GRAVY (calculated)

-0.243

Length

318 amino acids

Sequence
(BLAST)

001: MEGVSYQRFP KIKIREVKDD YAKFELRETD ASMANALRRV MIAEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMAMRFSRDC DACDGDGQCE
101: FCSVEFHLRA KCMTDETLDV TSKDLISSDH TVVPVDFSDS SGYDSADKKG IIIVKLRRGQ ELRLRAIARK GIGKDHAKWS PAATVTFMYE PEIHINEDLM
201: ESLTLEEKTS WVESSPTKVF DIDASSQQVV VADAEAYTYD DEVLKKAEAM GKPGLVEIYA KEDSFIFTVE STGAIKASQL VLNAIDVLKQ KLDAVRLSED
301: TVEADDQFGE LGAHMRGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.