Factsheet for Zm00001d005295_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032900_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	Zm00001d032900_P001	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98576	Sorghum	nucleus	89.43	95.43
Os09t0110400-02	Rice	nucleus	82.57	87.58
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	75.71	83.86
TraesCS5B01G158300.1	Wheat	nucleus	78.86	83.38
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	74.86	83.17
TraesCS7D01G509400.1	Wheat	nucleus	74.57	82.86
TraesCS5A01G160900.1	Wheat	plastid	78.29	82.78
HORVU7Hr1G115770.2	Barley	nucleus	37.71	78.11
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	78.57	75.76
HORVU5Hr1G050250.6	Barley	nucleus	77.71	73.71
VIT_03s0180g00050.t01	Wine grape	nucleus	66.86	73.58
CDY37227	Canola	nucleus	66.57	72.59
KRH50412	Soybean	nucleus	66.0	72.41
Bra039839.1-P	Field mustard	nucleus	66.29	72.27
KRG89365	Soybean	nucleus	66.0	72.19
CDY62312	Canola	nucleus	65.43	72.01
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	67.71	71.82
CDY36631	Canola	nucleus	65.14	71.47
Bra015218.1-P	Field mustard	nucleus	65.14	71.47
Solyc05g010300.2.1	Tomato	nucleus	64.86	71.16
AT2G15430.1	Thale cress	nucleus	64.57	70.85
CDX71219	Canola	nucleus	56.57	70.21
AT2G15400.1	Thale cress	nucleus	60.57	66.46
GSMUA_Achr3P13120_001	Banana	cytosol	25.14	62.86
CDX71220	Canola	nucleus	58.57	46.17
GSMUA_Achr3P13130_001	Banana	cytosol	12.0	36.52
Zm00001d054013_P002	Maize	nucleus	24.0	22.58

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	UniProt:A0A1D6ELK2
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
InterPro:IPR036603	InterPro:IPR036643	ProteinID:ONM20768.1	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446
PANTHER:PTHR11800	InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI0008446E47	EnsemblPlantsGene:Zm00001d005295	EnsemblPlants:Zm00001d005295_P001	EnsemblPlants:Zm00001d005295_T001	SEG:seg	:

Description

DNA-directed RNA polymerases II IV and V subunit 3

Coordinates

chr2:-:168137133..168145157

Molecular Weight (calculated)

38870.2 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.211

Length

350 amino acids

Sequence
(BLAST)

001: MDRPSGTSYQ RFPRVRIREL KDDYAKFELR DTDASMANAL RRVMIAEVPT VAIDLVEIEV NSSVLNDEFI AHRLGLIPLT SAAAMQMRFS RDCDACDGDG
101: SCEYCSVEFH LSVHATDSDQ TLEVTSNDLR SMDPKVCPVD QARAYQHALG GTDPFGANAS NENRQVIHHL ASRPTCLCLL YVAYFRGILI VKLRRGQELR
201: LRAIARKGIG KDHAKWSPAA TVTFMYEPDI RINEELMETL TVEERISLIE SSPTKVFELD SANQVVVKNA EAYTYDDEVI KHAEAIGKPG LVEITAKEDS
301: FVFTVETTGA ITAYELIMNA ITVLRQKLDA VRLQDDDGDL GELGAHLGGP

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.