Factsheet for Zm00001d054013_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29694	Sorghum	cytosol	84.41	84.86
TraesCS1B01G250000.1	Wheat	cytosol	73.66	77.18
TraesCS1A01G233400.1	Wheat	nucleus	73.66	77.18
TraesCS1D01G238500.1	Wheat	cytosol	73.39	76.9
Os03t0295400-01	Rice	nucleus	77.96	76.52
Os02t0723600-00	Rice	cytosol	61.02	75.67
HORVU1Hr1G057510.1	Barley	nucleus, plastid	75.0	69.23
GSMUA_Achr1P19210_001	Banana	cytosol	68.55	69.11
GSMUA_Achr7P06070_001	Banana	nucleus	67.47	67.84
VIT_19s0015g00780.t01	Wine grape	cytosol	62.1	62.1
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.17	59.8
Solyc12g015780.1.1	Tomato	nucleus	62.9	59.54
KRG98458	Soybean	nucleus	61.83	59.28
KRH46412	Soybean	nucleus	62.37	59.03
KRG99212	Soybean	cytosol	11.02	58.57
AT1G60620.1	Thale cress	nucleus	59.68	57.66
CDY40501	Canola	cytosol	56.45	55.26
CDY54765	Canola	cytosol	56.72	55.24
Bra027125.1-P	Field mustard	cytosol	56.72	55.24
AT1G60850.4	Thale cress	cytosol	55.38	54.93
CDY24544	Canola	cytosol	58.87	54.89
Bra031493.1-P	Field mustard	cytosol	58.6	54.64
CDY34129	Canola	cytosol	57.8	53.88
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	43.28	46.94
Zm00001d005295_P001	Maize	extracellular	22.58	24.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100191943	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1
ProteinID:AQK61058.1	UniProt:B4FAR4	EMBL:BT034202	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000
PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40
InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI00017B61E7	EnsemblPlantsGene:Zm00001d054013
EnsemblPlants:Zm00001d054013_P002	EnsemblPlants:Zm00001d054013_T002	:	:	:	:

Description

RNA polymerase I subunit 43

Coordinates

chr4:+:245162166..245166098

Molecular Weight (calculated)

41690.1 Da

IEP (calculated)

5.778

GRAVY (calculated)

-0.323

Length

372 amino acids

Sequence
(BLAST)

001: MPKKGTKSKK EKVDDVPNEQ ENKLPDYLEL QRTRVVCNAD APIHTQGFQY SGAFAAMGID NSVSVDKFCK NFKIEINRLT EDYMEFDMIG IDASIANAFR
101: RILISEVPTM AIEKVFMADN NSVIADEVLS HRLGLIPLDA DPRLFEYISE NDVPNERNTI VYKLHVSCPK NSQRITVKSS ELEWLPEGSQ LSMSAPAQSG
201: DKQKTFTSFS QSQKEILEKP LGVKYKDITI ARLGPGQAIE LEAHAVKGTG NVHAKWSPVA TAWYRMLPEV VILKEVEGPQ AEELVNKCRV NVFDIEDLAN
301: GGKRAVVARP RACTLCRECV MGPNEKQVEL RRVRDHFIFT IESTGSMPPE VLFTEAVKIL EEKCARVISE LS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.