Factsheet for Bra027125.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54765	Canola	cytosol	100.0	100.0
AT1G60850.4	Thale cress	cytosol	80.63	82.13
Bra031493.1-P	Field mustard	cytosol	74.35	71.18
KRG99212	Soybean	cytosol	12.83	70.0
VIT_19s0015g00780.t01	Wine grape	cytosol	65.97	67.74
KRG98458	Soybean	nucleus	64.92	63.92
KRH46412	Soybean	nucleus	64.4	62.6
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.87	62.09
Solyc12g015780.1.1	Tomato	nucleus	63.87	62.09
GSMUA_Achr1P19210_001	Banana	cytosol	59.69	61.79
GSMUA_Achr7P06070_001	Banana	nucleus	58.12	60.0
TraesCS1D01G238500.1	Wheat	cytosol	55.76	60.0
TraesCS1B01G250000.1	Wheat	cytosol	55.76	60.0
TraesCS1A01G233400.1	Wheat	nucleus	55.76	60.0
Os03t0295400-01	Rice	nucleus	57.33	57.78
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	51.83	57.73
KXG29694	Sorghum	cytosol	55.5	57.3
Zm00001d054013_P002	Maize	nucleus	55.24	56.72
Os02t0723600-00	Rice	cytosol	44.5	56.67
HORVU1Hr1G057510.1	Barley	nucleus, plastid	56.54	53.6
Bra015218.1-P	Field mustard	nucleus	21.47	25.71
Bra039839.1-P	Field mustard	nucleus	21.47	25.55

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EnsemblPlantsGene:Bra027125
EnsemblPlants:Bra027125.1	EnsemblPlants:Bra027125.1-P	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643	UniProt:M4EEB3	PFAM:PF01000	PFAM:PF01193
ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf
SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI00025426BF	SEG:seg	:

Description

AT1G60850 (E=2e-168) ATRPAC42, AAC42 | ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization

Coordinates

chrA09:+:8663276..8665384

Molecular Weight (calculated)

42552.8 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.220

Length

382 amino acids

Sequence
(BLAST)

001: MVTEEDKIFA KNFKIDDLSD VPAGLPPHLK LKQNRVVSKK DASVDTADAI YSGSYVSSGV DNSVKLENFY EDFKVDVISC TETDMEFDMI GIDAAFANAF
101: RRILIAEVPS MAIEKVLIAY NTSLIVDEVL AHRIGLIPIA ADPRLFEYLT ENDQPNEKNT IVFKLHVKCP KGQPRLQVLT NELQWLPNGS EFLKETGGST
201: SNSNSNSKPK TYTSFSCSQD SLPEFADNPI TPTYLDILIA KLSPGQEIEL EAHAVKGIGK THAKWSPVGT AWYRMLPEVV LLGEVEDEKA ERLVKVCPQN
301: VFDIEDMGNG RKRATVAQPR NCTLCKECIR DHDLVDLVDL RSVKNHFIFK IESTGSLPPD VIFTEAVKIL EDKCERVIAD LS

Best Arabidopsis Sequence Match ( AT1G60850.1 )
(BLAST)

001: MVTKAEKQFA KNFNIDDLPD VPAGLPPHLK AQQTRVVSKN NAPAHTASAI YSGTYVSSTE EDDNVKLGNF YDNFKVDVVS LTKTDMEFDM IGIDAAFANA
101: FRRILIAEVP SMAIEKVLIA YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL TSDLKWLPNG SELLRESENK
201: TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE
301: DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE AVKILEAKCE AITDF

Arabidopsis Description

ATRPAC42DNA-directed RNA polymerase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.