Factsheet for GSMUA_Achr7P06070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19210_001	Banana	cytosol	87.03	87.26
TraesCS1D01G238500.1	Wheat	cytosol	67.84	70.7
TraesCS1B01G250000.1	Wheat	cytosol	67.84	70.7
TraesCS1A01G233400.1	Wheat	nucleus	67.57	70.42
KXG29694	Sorghum	cytosol	68.38	68.38
Os02t0723600-00	Rice	cytosol	55.14	68.0
VIT_19s0015g00780.t01	Wine grape	cytosol	68.11	67.74
Os03t0295400-01	Rice	nucleus	69.19	67.55
Zm00001d054013_P002	Maize	nucleus	67.84	67.47
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	67.84	63.87
Solyc12g015780.1.1	Tomato	nucleus	67.57	63.61
HORVU1Hr1G057510.1	Barley	nucleus, plastid	68.11	62.53
AT1G60620.1	Thale cress	nucleus	62.97	60.52
KRG98458	Soybean	nucleus	62.97	60.05
KRH46412	Soybean	nucleus	62.97	59.29
CDY40501	Canola	cytosol	60.27	58.68
KRG99212	Soybean	cytosol	11.08	58.57
CDY54765	Canola	cytosol	60.0	58.12
Bra027125.1-P	Field mustard	cytosol	60.0	58.12
AT1G60850.4	Thale cress	cytosol	58.38	57.6
CDY34129	Canola	cytosol	61.08	56.64
Bra031493.1-P	Field mustard	cytosol	61.08	56.64
CDY24544	Canola	cytosol	60.81	56.39
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	44.59	48.1
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	22.97	25.76
GSMUA_Achr3P13120_001	Banana	cytosol	9.73	25.71
GSMUA_Achr3P13130_001	Banana	cytosol	3.78	12.17

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	ncoils:Coil
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
EnsemblPlantsGene:GSMUA_Achr7G06070_001	EnsemblPlants:GSMUA_Achr7P06070_001	EnsemblPlants:GSMUA_Achr7T06070_001	InterPro:IPR036603	InterPro:IPR036643	UniProt:M0TF47
PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like
InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000294CE94

Description

Putative DNA-directed RNA polymerases I and III subunit rpac1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06070_001]

Coordinates

chr7:-:4490766..4495541

Molecular Weight (calculated)

41006.5 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.179

Length

370 amino acids

Sequence
(BLAST)

001: MSSSTKVSAL DMPDVPMGQL PEHLHLQRTR VVCKADAPIH TEGIQYSGAY ASIGVDNSLG PNKFCKNFKT EVVRLTEDEI EFDMVGIDAS LANAFRRILI
101: AEVPSMAIEK VLMVNNTSVI ADEVLAHRLG LVPLNADPRL FEYLSENDTP NERNTIVYKM DVSCKKGGSR VTVKSDQLKW LPNGSELQMT TYDSSAKAKS
201: YTSFSCSQDS MPEFSKKPLG VRFDDIILAK LGPGQVIELE AHAVKGMGKV HAKWSPVATA WYRMLPEVVI LKEVKGDDAE KLVKKCPVGV FDIEDLGNGE
301: KKAVVANSRT CTLCRECVRG VNEELVELRR VKDHFIFTIE STGAFSPEEL FMKAVKILEE KCDRVISELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.