CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054013_P002	Maize	nucleus	84.86	84.41
TraesCS1B01G250000.1	Wheat	cytosol	77.03	80.28
TraesCS1A01G233400.1	Wheat	nucleus	77.03	80.28
TraesCS1D01G238500.1	Wheat	cytosol	76.76	80.0
Os02t0723600-00	Rice	cytosol	62.16	76.67
Os03t0295400-01	Rice	nucleus	76.49	74.67
HORVU1Hr1G057510.1	Barley	nucleus, plastid	77.3	70.97
GSMUA_Achr1P19210_001	Banana	cytosol	68.38	68.56
GSMUA_Achr7P06070_001	Banana	nucleus	68.38	68.38
VIT_19s0015g00780.t01	Wine grape	cytosol	62.43	62.1
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	65.14	61.32
Solyc12g015780.1.1	Tomato	nucleus	65.14	61.32
KRG99212	Soybean	cytosol	11.35	60.0
KRG98458	Soybean	nucleus	62.16	59.28
KRH46412	Soybean	nucleus	62.7	59.03
AT1G60620.1	Thale cress	nucleus	59.73	57.4
CDY40501	Canola	cytosol	57.03	55.53
CDY54765	Canola	cytosol	57.3	55.5
Bra027125.1-P	Field mustard	cytosol	57.3	55.5
AT1G60850.4	Thale cress	cytosol	55.41	54.67
Bra031493.1-P	Field mustard	cytosol	58.38	54.14
CDY24544	Canola	cytosol	58.38	54.14
CDY34129	Canola	cytosol	57.57	53.38
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	42.43	45.77
EER98576	Sorghum	nucleus	24.05	27.13

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EntrezGene:8071624
UniProt:C5XXF5	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	ProteinID:EES06445.1	GO:GO:0001054	GO:GO:0001056
GO:GO:0003674	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0005730
GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0006383	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	EnsemblPlants:KXG29694	ProteinID:KXG29694	ProteinID:KXG29694.1	PFAM:PF01000	PFAM:PF01193
PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662
EnsemblPlantsGene:SORBI_3004G077800	SUPFAM:SSF55257	SUPFAM:SSF56553	unigene:Sbi.7545	UniParc:UPI0001A85C0E	RefSeq:XP_002453469.1

Description

hypothetical protein

Coordinates

chr4:-:6401334..6406081

Molecular Weight (calculated)

41193.5 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.270

Length

370 amino acids

Sequence
(BLAST)

001: MPKKGTKSKE VDNAPNQQEN KLPDYLEVQR TRVVCNADAP IHTQGYQYSG TFAAMGVDNS VSVEKFCKNF KIEINRLTED DMEFDMIGID ASIANAFRRI
101: LIAEVPTMAI EKIFMVDNTS VIADEVLSHR LGLIPLRADP RLFDYISEND VPNERNTVVY KLHVSCPKGS QRITVKSSEL EWLPEGSQLS MAAPAQSGDK
201: QKTFTSFSQS QKEILEEPLG VKFKDITIAR LGPGQAIELE AHAVKGVGKV HAKWSPVATA WYRMLPEVVI LKDIEGDDAE ELVKKCPVNV FDIEDLGNGG
301: KRAVVAKPRA CTLCRECVMG PNGNQVELRR VRDHFIFTIE STGALPPEVL FTEAVKILEE KCERVISELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.