Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99212 | Soybean | cytosol | 13.51 | 74.29 |
| Bra031493.1-P | Field mustard | cytosol | 74.81 | 72.18 |
| CDY24544 | Canola | cytosol | 74.81 | 72.18 |
| CDY34129 | Canola | cytosol | 74.29 | 71.68 |
| AT1G60850.4 | Thale cress | cytosol | 69.35 | 71.2 |
| VIT_19s0015g00780.t01 | Wine grape | cytosol | 66.49 | 68.82 |
| KRG98458 | Soybean | nucleus | 65.45 | 64.95 |
| PGSC0003DMT400076609 | Potato | cytoskeleton, cytosol, nucleus | 66.23 | 64.89 |
| Solyc12g015780.1.1 | Tomato | nucleus | 66.23 | 64.89 |
| GSMUA_Achr1P19210_001 | Banana | cytosol | 61.82 | 64.5 |
| KRH46412 | Soybean | nucleus | 65.45 | 64.12 |
| TraesCS1B01G250000.1 | Wheat | cytosol | 58.96 | 63.94 |
| TraesCS1A01G233400.1 | Wheat | nucleus | 58.96 | 63.94 |
| TraesCS1D01G238500.1 | Wheat | cytosol | 58.96 | 63.94 |
| GSMUA_Achr7P06070_001 | Banana | nucleus | 60.52 | 62.97 |
| KXG29694 | Sorghum | cytosol | 57.4 | 59.73 |
| Zm00001d054013_P002 | Maize | nucleus | 57.66 | 59.68 |
| Os03t0295400-01 | Rice | nucleus | 57.92 | 58.84 |
| Os02t0723600-00 | Rice | cytosol | 45.71 | 58.67 |
| HORVU1Hr1G057510.1 | Barley | nucleus, plastid | 59.74 | 57.07 |
| Bra040351.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 50.39 | 56.56 |
| AT2G15430.1 | Thale cress | nucleus | 21.3 | 25.71 |
| AT2G15400.1 | Thale cress | nucleus | 21.04 | 25.39 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | MapMan:35.1 | EntrezGene:842356 |
| UniProt:A0A178W5W0 | ProteinID:AAB71974.1 | ProteinID:AEE33706.1 | EMBL:AF386969 | ProteinID:ANM57952.1 | ArrayExpress:AT1G60620 |
| EnsemblPlantsGene:AT1G60620 | RefSeq:AT1G60620 | TAIR:AT1G60620 | RefSeq:AT1G60620-TAIR-G | EnsemblPlants:AT1G60620.1 | TAIR:AT1G60620.1 |
| Symbol:ATRPAC43 | EMBL:BT001161 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0001054 |
| GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006360 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 | InterPro:IPR036643 | EMBL:L34773 | RefSeq:NP_001320426.1 |
| RefSeq:NP_176261.1 | ProteinID:OAP13890.1 | PFAM:PF01000 | PFAM:PF01193 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF13 |
| UniProt:Q39216 | InterPro:RBP11-like | InterPro:RNAPI/II_AC40 | InterPro:RNApol_insert_sf | SMART:SM00662 | SUPFAM:SSF55257 |
| SUPFAM:SSF56553 | UniParc:UPI00000AC22E | : | : | : | : |
Description
ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
Coordinates
chr1:+:22330894..22333568
Molecular Weight (calculated)
43370.0 Da
IEP (calculated)
5.859
GRAVY (calculated)
-0.337
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.