Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0295400-01 | Rice | nucleus | 82.0 | 64.91 |
| KXG29694 | Sorghum | cytosol | 76.67 | 62.16 |
| TraesCS1A01G233400.1 | Wheat | nucleus | 73.33 | 61.97 |
| TraesCS1D01G238500.1 | Wheat | cytosol | 73.0 | 61.69 |
| TraesCS1B01G250000.1 | Wheat | cytosol | 73.0 | 61.69 |
| Zm00001d054013_P002 | Maize | nucleus | 75.67 | 61.02 |
| KRG99212 | Soybean | cytosol | 14.0 | 60.0 |
| HORVU1Hr1G057510.1 | Barley | nucleus, plastid | 74.33 | 55.34 |
| GSMUA_Achr1P19210_001 | Banana | cytosol | 68.0 | 55.28 |
| GSMUA_Achr7P06070_001 | Banana | nucleus | 68.0 | 55.14 |
| VIT_19s0015g00780.t01 | Wine grape | cytosol | 63.0 | 50.81 |
| PGSC0003DMT400076609 | Potato | cytoskeleton, cytosol, nucleus | 64.0 | 48.85 |
| Solyc12g015780.1.1 | Tomato | nucleus | 63.33 | 48.35 |
| AT1G60620.1 | Thale cress | nucleus | 58.67 | 45.71 |
| KRG98458 | Soybean | nucleus | 58.67 | 45.36 |
| KRH46412 | Soybean | nucleus | 59.33 | 45.29 |
| AT1G60850.4 | Thale cress | cytosol | 56.0 | 44.8 |
| CDY54765 | Canola | cytosol | 56.67 | 44.5 |
| Bra027125.1-P | Field mustard | cytosol | 56.67 | 44.5 |
| CDY40501 | Canola | cytosol | 56.33 | 44.47 |
| CDY24544 | Canola | cytosol | 56.33 | 42.36 |
| Bra031493.1-P | Field mustard | cytosol | 56.0 | 42.11 |
| CDY34129 | Canola | cytosol | 55.67 | 41.85 |
| Bra040351.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 39.0 | 34.11 |
| Os09t0110400-02 | Rice | nucleus | 19.33 | 17.58 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | Gene3D:3.30.70.20 | MapMan:35.2 |
| ProteinID:BAD13030.1 | ProteinID:BAF09887.2 | ProteinID:BAS80675.1 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert |
| ProteinID:EEE57714.1 | GO:GO:0001054 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 | InterPro:IPR036643 |
| EnsemblPlantsGene:Os02g0723600 | EnsemblPlants:Os02t0723600-00 | PFAM:PF01000 | PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 |
| PANTHER:PTHR11800:SF13 | UniProt:Q6Z5L9 | InterPro:RBP11-like | InterPro:RNAPI/II_AC40 | InterPro:RNApol_insert_sf | SMART:SM00662 |
| SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI00003503F8 | : | : | : |
Description
Similar to RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed. (Os02t0723600-00)
Coordinates
chr2:-:30067771..30071645
Molecular Weight (calculated)
33462.0 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.414
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKSSKDTD DDHEPKQQEK KLPEHLEVQR TRVVCKADAP VNTEGFQYAG AYSAMGIDNS VSAEKFCKNF KVEISRLTED DMEFDMIGID ASIANAFRRI
101: LIAELPTMAI EKVLMVDNTS VIADEVLSHR LGLIPLDADP RHFEYMSEND VPNERNTIVY KLHVSCKKGS PRLTVKSGDL EWLPEGSRLP LASPAQSRYK
201: QKTYTSFSQS QKDILEKPLG VKFKDITIAR LGPGQVVFRK EIKGDNAEKL VKKCPVNVFD IEDLGNVTIE STGGLPPEAL FTEAVRILEE KCERVISGLS
101: LIAELPTMAI EKVLMVDNTS VIADEVLSHR LGLIPLDADP RHFEYMSEND VPNERNTIVY KLHVSCKKGS PRLTVKSGDL EWLPEGSRLP LASPAQSRYK
201: QKTYTSFSQS QKDILEKPLG VKFKDITIAR LGPGQVVFRK EIKGDNAEKL VKKCPVNVFD IEDLGNVTIE STGGLPPEAL FTEAVRILEE KCERVISGLS
001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
Arabidopsis Description
ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.