Factsheet for TraesCS1A01G233400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G250000.1	Wheat	cytosol	98.59	98.59
TraesCS1D01G238500.1	Wheat	cytosol	98.31	98.31
HORVU1Hr1G057510.1	Barley	nucleus, plastid	95.77	84.37
KXG29694	Sorghum	cytosol	80.28	77.03
Os03t0295400-01	Rice	nucleus	79.72	74.67
Zm00001d054013_P002	Maize	nucleus	77.18	73.66
Os02t0723600-00	Rice	cytosol	61.97	73.33
GSMUA_Achr1P19210_001	Banana	cytosol	70.42	67.75
GSMUA_Achr7P06070_001	Banana	nucleus	70.42	67.57
VIT_19s0015g00780.t01	Wine grape	cytosol	67.04	63.98
KRG99212	Soybean	cytosol	12.11	61.43
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	67.61	61.07
Solyc12g015780.1.1	Tomato	nucleus	67.61	61.07
KRG98458	Soybean	nucleus	65.35	59.79
KRH46412	Soybean	nucleus	65.63	59.29
AT1G60620.1	Thale cress	nucleus	63.94	58.96
AT1G60850.4	Thale cress	cytosol	59.15	56.0
CDY40501	Canola	cytosol	59.72	55.79
CDY54765	Canola	cytosol	60.0	55.76
Bra027125.1-P	Field mustard	cytosol	60.0	55.76
Bra031493.1-P	Field mustard	cytosol	61.97	55.14
CDY34129	Canola	cytosol	61.69	54.89
CDY24544	Canola	cytosol	61.69	54.89
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	45.63	47.23
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	23.94	26.9
TraesCS5A01G160900.1	Wheat	plastid	24.79	26.59

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	ncoils:Coil
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800
PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257
SUPFAM:SSF56553	EnsemblPlantsGene:TraesCS1A01G233400	EnsemblPlants:TraesCS1A01G233400.1	TIGR:cd07032	:	:

Description

No Description!

Coordinates

chr1A:-:407315579..407320241

Molecular Weight (calculated)

39510.2 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.229

Length

355 amino acids

Sequence
(BLAST)

001: MESPDGSSLP DFLELQRTRV LCKADAPTHT EGFQYSGAFA AMGVDTSVSV EKFCKNFKIE INRLTDEDME FDMIGVDASI ANAFRRILIA EVPTMAIEKV
101: FMVDNTSVIA DEVLSHRLGL IPLDADPRLF DYISDDVPNE RNTIVYKLHV SCEKGSQRLT VKSGQLEWLP EGSQLTMASP AQSGDNQRTY TSFGQSQQNT
201: SERPLGVKYN DITIARLGPG QAIELEAHAV KGVGKVHAKW SPVATAWYRM LPEVVLLKEI KNGDAEELVK KCPVNVFDIE DLGKGEKRAV VAKPRACTLC
301: RECVRLADDQ VELRRVRDHF IFTIESTGSL PPEVLFTEAV NILEEKCERV ISELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.