Factsheet for HORVU1Hr1G057510.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G250000.1	Wheat	cytosol	84.62	96.06
TraesCS1D01G238500.1	Wheat	cytosol	84.37	95.77
TraesCS1A01G233400.1	Wheat	nucleus	84.37	95.77
KXG29694	Sorghum	cytosol	70.97	77.3
Os03t0295400-01	Rice	nucleus	71.71	76.25
Zm00001d054013_P002	Maize	nucleus	69.23	75.0
Os02t0723600-00	Rice	cytosol	55.34	74.33
GSMUA_Achr1P19210_001	Banana	cytosol	62.78	68.56
GSMUA_Achr7P06070_001	Banana	nucleus	62.53	68.11
VIT_19s0015g00780.t01	Wine grape	cytosol	59.55	64.52
KRG99212	Soybean	cytosol	10.92	62.86
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	60.79	62.34
Solyc12g015780.1.1	Tomato	nucleus	60.55	62.09
KRG98458	Soybean	nucleus	58.56	60.82
KRH46412	Soybean	nucleus	59.06	60.56
AT1G60620.1	Thale cress	nucleus	57.07	59.74
CDY54765	Canola	cytosol	53.6	56.54
Bra027125.1-P	Field mustard	cytosol	53.6	56.54
CDY40501	Canola	cytosol	53.1	56.32
AT1G60850.4	Thale cress	cytosol	52.36	56.27
Bra031493.1-P	Field mustard	cytosol	55.09	55.64
CDY34129	Canola	cytosol	54.84	55.39
CDY24544	Canola	cytosol	54.84	55.39
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	40.94	48.1
HORVU7Hr1G115770.2	Barley	nucleus	10.67	25.44
HORVU5Hr1G050250.6	Barley	nucleus	22.33	24.39

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	UniProt:A0A287FRG6
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
EnsemblPlantsGene:HORVU1Hr1G057510	EnsemblPlants:HORVU1Hr1G057510.1	InterPro:IPR036603	InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193
ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf
SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000B47AFAB	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:419764872..419770027

Molecular Weight (calculated)

44504.3 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.288

Length

403 amino acids

Sequence
(BLAST)

001: RPASLHQPLS HPHFLDASCP RPLPSPAAPP PRGHDRRPLP PASLTPAGME NPGGSSLPAF LELQRTRVLC KADAPTHTEG FQYSGAFAAM GVDTSVSVEK
101: FCSNFKIEIN RLTEEDMEFD MIGVDASIAN AFRRILISEV PTMAIEKVFM VDNTSVIADE VLSHRLGLIP LDADPRLFEY ISDDVPNERN TIVYKLHVSC
201: EKGSQRLTVK SGQLEWLPEG SQLTMASPAQ SGDNQRTYTS FGQSQQNTSE RPLGVKYKDI TIARLGPGQA IELEAHAVKG VGKVHAKWSP VATAWYRMLP
301: EVVLLKEIKD GDAEELVKKC PVNVFDIEDL GNGKKRAVVA KPRACTLCRE CVRPTDDQVE LRRVRDHFIF TIESTGALPP EVLFTEAVKI LEEKCERVIS
401: ELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.