CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98458	Soybean	nucleus	97.2	98.45
KRG99212	Soybean	cytosol	15.52	87.14
VIT_19s0015g00780.t01	Wine grape	cytosol	69.47	73.39
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	66.92	66.92
TraesCS1D01G238500.1	Wheat	cytosol	59.8	66.2
TraesCS1B01G250000.1	Wheat	cytosol	59.8	66.2
Solyc12g015780.1.1	Tomato	nucleus	65.9	65.9
GSMUA_Achr1P19210_001	Banana	cytosol	61.83	65.85
TraesCS1A01G233400.1	Wheat	nucleus	59.29	65.63
AT1G60620.1	Thale cress	nucleus	64.12	65.45
AT1G60850.4	Thale cress	cytosol	61.58	64.53
CDY54765	Canola	cytosol	62.6	64.4
Bra027125.1-P	Field mustard	cytosol	62.6	64.4
CDY40501	Canola	cytosol	61.07	63.16
GSMUA_Achr7P06070_001	Banana	nucleus	59.29	62.97
KXG29694	Sorghum	cytosol	59.03	62.7
Bra031493.1-P	Field mustard	cytosol	63.36	62.41
Zm00001d054013_P002	Maize	nucleus	59.03	62.37
CDY34129	Canola	cytosol	63.1	62.16
CDY24544	Canola	cytosol	63.1	62.16
Os03t0295400-01	Rice	nucleus	58.52	60.69
Os02t0723600-00	Rice	cytosol	45.29	59.33
HORVU1Hr1G057510.1	Barley	nucleus, plastid	60.56	59.06
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	45.8	52.48
KRH50412	Soybean	nucleus	23.66	29.15
KRG89365	Soybean	nucleus	23.41	28.75

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100818494	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1
EMBL:ACUP02005343	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	EnsemblPlantsGene:GLYMA_08G331900	GO:GO:0001054
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046983	UniProt:I1KYM4	InterPro:IPR036603	InterPro:IPR036643	EnsemblPlants:KRH46412
ProteinID:KRH46412	ProteinID:KRH46412.1	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800
PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257
SUPFAM:SSF56553	UniParc:UPI0002338E22	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:44928884..44933655

Molecular Weight (calculated)

43934.3 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.340

Length

393 amino acids

Sequence
(BLAST)

001: MSSSSSSSSS SEDESMSEQS NELGLDFILS LDNVPSKLPP HLELFKTRVL CNNDAPVHTD TVQYSGAYAI MGVDNSVRLD SFCENFKVEV KRLTDSDIEF
101: DMIGIDPAIA NAFRRILIAE VPTMAIERVY IANNTSVVQD EVLSHRLGLI PIRADPRLFE YPENAGDDKN EKNTIVFKLH VRCQVGQPRI TVKSDKLKWL
201: PNGSELPCED VKPNAGSKPK TFTSFTCSQD SLPEFSNNSI GLTYSDIILA KLGPGQEIEL EAHAVKGTGK THAKWSPVAT TWYRMLPEVV LLKDVEDELA
301: EELKNKCPVN VFDIEDIGKG KRRAKVARPR DCTLCRECIR GGKEWEDRVS LRRVKNHFIF TIESTGALPP EVLFTEAVKI LEDKCERVIT ELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.