Factsheet for Os03t0295400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0723600-00	Rice	cytosol	64.91	82.0
TraesCS1B01G250000.1	Wheat	cytosol	74.67	79.72
TraesCS1A01G233400.1	Wheat	nucleus	74.67	79.72
TraesCS1D01G238500.1	Wheat	cytosol	74.41	79.44
Zm00001d054013_P002	Maize	nucleus	76.52	77.96
KXG29694	Sorghum	cytosol	74.67	76.49
HORVU1Hr1G057510.1	Barley	nucleus, plastid	76.25	71.71
GSMUA_Achr1P19210_001	Banana	cytosol	69.13	71.0
GSMUA_Achr7P06070_001	Banana	nucleus	67.55	69.19
VIT_19s0015g00780.t01	Wine grape	cytosol	63.06	64.25
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.06	60.81
Solyc12g015780.1.1	Tomato	nucleus	62.8	60.56
KRG99212	Soybean	cytosol	11.08	60.0
KRG98458	Soybean	nucleus	61.21	59.79
KRH46412	Soybean	nucleus	60.69	58.52
AT1G60620.1	Thale cress	nucleus	58.84	57.92
AT1G60850.4	Thale cress	cytosol	57.26	57.87
CDY54765	Canola	cytosol	57.78	57.33
Bra027125.1-P	Field mustard	cytosol	57.78	57.33
CDY40501	Canola	cytosol	57.26	57.11
CDY24544	Canola	cytosol	58.84	55.89
Bra031493.1-P	Field mustard	cytosol	58.84	55.89
CDY34129	Canola	cytosol	58.31	55.39
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	43.54	48.1
Os09t0110400-02	Rice	nucleus	22.96	26.36

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EntrezGene:4332531
ProteinID:ABF95431.1	ProteinID:BAF11737.1	ProteinID:BAS83710.1	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
ProteinID:EEE58874.1	GO:GO:0001054	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736
GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643
EnsemblPlantsGene:Os03g0295400	EnsemblPlants:Os03t0295400-01	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800
PANTHER:PTHR11800:SF13	UniProt:Q10MU2	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662
SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI0000DB45C5	RefSeq:XP_015631447.1	:	:

Description

Similar to Ferredoxin. (Os03t0295400-01)

Coordinates

chr3:-:10320222..10324794

Molecular Weight (calculated)

42099.9 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.280

Length

379 amino acids

Sequence
(BLAST)

001: MPKKGTKSRK GTDDEPKQEE KNKLPEHLEV QRTRVVCKGD APVNTEGFQY AGAFAAMGID NSVSADKFCK NFKVVVNRLT EDDMEFDMIG IDASMANAFR
101: RILIAEVPTM AIEKVLMADN TSVIADEVLS HRLGLIPLDA DPRLFEYISE NDVPTERNTI VYKLHVSCKK GSPRLTVKSG DLEWLPEGSQ LPLASPAQSG
201: DKQKTYTSFS QSQKDILEKP LGVKFKDITI ARLGPGQAIE LEVHAVKGIG KVHAKWSPVA TAWYRMLPEV VLREEIKDAD AEMLVAKCPV NVFDIEDLGN
301: GEKRAVVARP RACTLCRQCV MGPTGEVMGP TVEQVELRRV RDHFIFTIES TGALPPEMLF TEAVRILEEK CERVISELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.