CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98458	Soybean	nucleus	88.57	15.98
KRH46412	Soybean	nucleus	87.14	15.52
Os02t0723600-00	Rice	cytosol	60.0	14.0
AT1G60620.1	Thale cress	nucleus	74.29	13.51
VIT_19s0015g00780.t01	Wine grape	cytosol	70.0	13.17
CDY40501	Canola	cytosol	70.0	12.89
Bra027125.1-P	Field mustard	cytosol	70.0	12.83
CDY54765	Canola	cytosol	70.0	12.83
AT1G60850.4	Thale cress	cytosol	68.57	12.8
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	61.43	12.54
Solyc12g015780.1.1	Tomato	nucleus	68.57	12.21
TraesCS1D01G238500.1	Wheat	cytosol	61.43	12.11
TraesCS1B01G250000.1	Wheat	cytosol	61.43	12.11
TraesCS1A01G233400.1	Wheat	nucleus	61.43	12.11
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	67.14	11.96
GSMUA_Achr1P19210_001	Banana	cytosol	62.86	11.92
Bra031493.1-P	Field mustard	cytosol	67.14	11.78
CDY34129	Canola	cytosol	67.14	11.78
CDY24544	Canola	cytosol	67.14	11.78
KXG29694	Sorghum	cytosol	60.0	11.35
Os03t0295400-01	Rice	nucleus	60.0	11.08
GSMUA_Achr7P06070_001	Banana	nucleus	58.57	11.08
Zm00001d054013_P002	Maize	nucleus	58.57	11.02
HORVU1Hr1G057510.1	Barley	nucleus, plastid	62.86	10.92
KRH50412	Soybean	nucleus	37.14	8.15
KRG89365	Soybean	nucleus	37.14	8.12

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	MapMan:35.2	EMBL:ACUP02011006	InterPro:DNA-dir_RNA_pol_insert
EnsemblPlantsGene:GLYMA_18G130000	GO:GO:0001054	GO:GO:0001056	GO:GO:0003674	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046983	InterPro:IPR036643	UniProt:K7MRR8	EnsemblPlants:KRG99212	ProteinID:KRG99212
ProteinID:KRG99212.1	PFAM:PF01000	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf
SUPFAM:SSF56553	UniParc:UPI000296A095	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:17950241..17950627

Molecular Weight (calculated)

8005.7 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.307

Length

70 amino acids

Sequence
(BLAST)

1: MAIERVYITN NTSVVQDEVL SHRLGLIPIR ADPKLFEYLE NAGDDKNEKN TIVFKLHVRC QVGQPRIIGK

Best Arabidopsis Sequence Match ( AT1G60620.2 )
(BLAST)

001: MGVDNSVRLE NFSEDFKVDV ISLTETDMVF DMIGVHAGIA NAFRRILLAE LPSMAIEKVY VANNTSVIQD EVLAHRLGLI PIAADPRLFE YLSENDQPNE
101: KNTIVFKLHV KCLKGDPRRK VLTSELKWLP NGSELIKESG GSTTTPKTYT SFNHSQDSFP EFAENPIRPT LKDILIAKLG PGQEIELEAH AVKGIGKTHA
201: KWSPVATAWY RMLPEVVLLK EFEGKHAEEL VKVCPKKVFD IEDMGQGRKR ATVARPRDCS LCRECIRDGV EWEDQVDLRR VKNHFIFTIE STGSQPPEVL
301: FNEAVKILED KCERVISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.