CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50412	Soybean	nucleus	97.5	97.81
VIT_03s0180g00050.t01	Wine grape	nucleus	86.25	86.79
Bra015218.1-P	Field mustard	nucleus	82.5	82.76
CDY36631	Canola	nucleus	82.5	82.76
Solyc05g010300.2.1	Tomato	nucleus	82.5	82.76
CDY62312	Canola	nucleus	82.19	82.7
AT2G15430.1	Thale cress	nucleus	82.19	82.45
Bra039839.1-P	Field mustard	nucleus	81.88	81.62
CDY37227	Canola	nucleus	81.56	81.31
CDX71219	Canola	nucleus	67.81	76.95
AT2G15400.1	Thale cress	nucleus	76.56	76.8
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	73.75	74.92
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	73.12	74.05
TraesCS7D01G509400.1	Wheat	nucleus	72.5	73.65
Os09t0110400-02	Rice	nucleus	75.94	73.64
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	75.62	73.33
TraesCS5B01G158300.1	Wheat	nucleus	74.06	71.6
TraesCS5A01G160900.1	Wheat	plastid	73.44	71.0
EER98576	Sorghum	nucleus	71.88	70.12
HORVU7Hr1G115770.2	Barley	nucleus	35.31	66.86
Zm00001d005295_P001	Maize	extracellular	72.19	66.0
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	73.12	64.46
HORVU5Hr1G050250.6	Barley	nucleus	73.12	63.41
GSMUA_Achr3P13120_001	Banana	cytosol	26.88	61.43
CDX71220	Canola	nucleus	70.0	50.45
GSMUA_Achr3P13130_001	Banana	cytosol	15.94	44.35
KRG99212	Soybean	cytosol	8.12	37.14
KRG98458	Soybean	nucleus	28.75	23.71
KRH46412	Soybean	nucleus	28.75	23.41

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100779047	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270
EMBL:ACUP02012206	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	EnsemblPlantsGene:GLYMA_20G019200	GO:GO:0001055
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0006139	GO:GO:0006351	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	UniProt:I1NDC0	InterPro:IPR036603
InterPro:IPR036643	EnsemblPlants:KRG89365	ProteinID:KRG89365	ProteinID:KRG89365.1	PFAM:PF01000	PFAM:PF01193
ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2	InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662
SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000233DA6F	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:1993431..1997897

Molecular Weight (calculated)

35714.5 Da

IEP (calculated)

4.462

GRAVY (calculated)

-0.268

Length

320 amino acids

Sequence
(BLAST)

001: MEGGVSYARM PRVKIRELKD DYAKFELRDT DASIANALRR VMIAEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFHLR VKCMTDQTLD VTSKDLYSSD PTVSPVDFSD PSATDSPDNN RGIIIVKLRR GQELKLRAIA RKGIGKDHAK WSPAATVTFM YEPEIHINED
201: LMETLTLEEK REWVDSSPTR VFEIDPVTQQ VMVVDAEAYT YDDEVLKKAE AMGKPGLVEI IARQDSFIFT VESTGAVKAS QLVLNAIEIL KQKLDAVRLS
301: EDTVEADDQF GELGAHMRGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.