Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G15430.1 | Thale cress | nucleus | 86.21 | 86.21 |
| CDY62312 | Canola | nucleus | 84.64 | 84.91 |
| Bra015218.1-P | Field mustard | nucleus | 83.39 | 83.39 |
| CDY36631 | Canola | nucleus | 83.39 | 83.39 |
| Bra039839.1-P | Field mustard | nucleus | 83.39 | 82.87 |
| CDY37227 | Canola | nucleus | 82.76 | 82.24 |
| CDX71219 | Canola | nucleus | 69.59 | 78.72 |
| KRH50412 | Soybean | nucleus | 76.8 | 76.8 |
| KRG89365 | Soybean | nucleus | 76.8 | 76.56 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 75.86 | 76.1 |
| Solyc05g010300.2.1 | Tomato | nucleus | 74.29 | 74.29 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 67.4 | 68.04 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 67.08 | 67.94 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 66.14 | 66.98 |
| Os09t0110400-02 | Rice | nucleus | 68.65 | 66.36 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 68.65 | 66.36 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 67.71 | 65.26 |
| TraesCS5A01G160900.1 | Wheat | plastid | 67.08 | 64.65 |
| EER98576 | Sorghum | nucleus | 65.52 | 63.72 |
| Zm00001d005295_P001 | Maize | extracellular | 66.46 | 60.57 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 67.08 | 58.95 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 31.03 | 58.58 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 66.14 | 57.18 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 24.45 | 55.71 |
| CDX71220 | Canola | nucleus | 72.1 | 51.8 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 13.79 | 38.26 |
| AT1G60850.4 | Thale cress | cytosol | 25.71 | 21.87 |
| AT1G60620.1 | Thale cress | nucleus | 25.39 | 21.04 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | EntrezGene:816032 |
| UniProt:A0A178VTE8 | ProteinID:AAB03740.1 | ProteinID:AAD22284.1 | ProteinID:AEC06397.1 | EMBL:AK228411 | ArrayExpress:AT2G15400 |
| EnsemblPlantsGene:AT2G15400 | RefSeq:AT2G15400 | TAIR:AT2G15400 | RefSeq:AT2G15400-TAIR-G | EnsemblPlants:AT2G15400.1 | TAIR:AT2G15400.1 |
| Unigene:At.40419 | EMBL:BT005715 | EMBL:BT006072 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert |
| GO:GO:0000418 | GO:GO:0000419 | GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 |
| InterPro:IPR036603 | InterPro:IPR036643 | RefSeq:NP_179142.1 | ProteinID:OAP09649.1 | PFAM:PF01000 | PFAM:PF01193 |
| PO:PO:0000293 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | UniProt:Q0WRA4 | UniProt:Q39212 |
| InterPro:RBP11-like | Symbol:RBP36B | InterPro:RNApol_insert_sf | SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 |
| UniParc:UPI000000C709 | SEG:seg | : | : | : | : |
Description
NRPD3BDNA-directed RNA polymerase II, third largest subunit [Source:UniProtKB/TrEMBL;Acc:Q0WRA4]
Coordinates
chr2:+:6712895..6714609
Molecular Weight (calculated)
35577.4 Da
IEP (calculated)
4.519
GRAVY (calculated)
-0.272
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVTYQRFP TVKIRELKDD YAKFELRETD VSMANALRRV MISEVPTMAI HLVKIEVNSS VLNDEFIAQR LSLIPLTSER AMSMRFCQDC EDCNGDEHCE
101: FCSVEFPLSA KCVTDQTLDV TSRDLYSADP TVTPVDFTSN SSTSDSSEHK GIIIAKLRRG QELKLKALAR KGIGKDHAKW SPAATVTYMY EPDIIINEEM
201: MNTLTDEEKI DLIESSPTKV FGIDPVTGQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIH PKHDSFVFTV ESTGALKASQ LVLNAIDILK QKLDAIRLSD
301: NTVEADDQFG ELGAHMREG
101: FCSVEFPLSA KCVTDQTLDV TSRDLYSADP TVTPVDFTSN SSTSDSSEHK GIIIAKLRRG QELKLKALAR KGIGKDHAKW SPAATVTYMY EPDIIINEEM
201: MNTLTDEEKI DLIESSPTKV FGIDPVTGQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIH PKHDSFVFTV ESTGALKASQ LVLNAIDILK QKLDAIRLSD
301: NTVEADDQFG ELGAHMREG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.