Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62312 | Canola | nucleus | 93.1 | 93.4 |
| Bra015218.1-P | Field mustard | nucleus | 92.16 | 92.16 |
| CDY36631 | Canola | nucleus | 92.16 | 92.16 |
| Bra039839.1-P | Field mustard | nucleus | 90.91 | 90.34 |
| CDY37227 | Canola | nucleus | 90.28 | 89.72 |
| CDX71219 | Canola | nucleus | 76.49 | 86.52 |
| AT2G15400.1 | Thale cress | nucleus | 86.21 | 86.21 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 83.07 | 83.33 |
| KRH50412 | Soybean | nucleus | 82.76 | 82.76 |
| KRG89365 | Soybean | nucleus | 82.45 | 82.19 |
| Solyc05g010300.2.1 | Tomato | nucleus | 79.62 | 79.62 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 71.47 | 72.15 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 70.22 | 71.11 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 69.91 | 70.79 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 73.04 | 70.61 |
| Os09t0110400-02 | Rice | nucleus | 72.73 | 70.3 |
| EER98576 | Sorghum | nucleus | 70.53 | 68.6 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 71.16 | 68.58 |
| TraesCS5A01G160900.1 | Wheat | plastid | 71.16 | 68.58 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 34.8 | 65.68 |
| Zm00001d005295_P001 | Maize | extracellular | 70.85 | 64.57 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 27.9 | 63.57 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 71.16 | 62.53 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 70.22 | 60.7 |
| CDX71220 | Canola | nucleus | 80.25 | 57.66 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 13.48 | 37.39 |
| AT1G60850.4 | Thale cress | cytosol | 25.71 | 21.87 |
| AT1G60620.1 | Thale cress | nucleus | 25.71 | 21.3 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | EntrezGene:816035 |
| UniProt:A0A178W202 | ProteinID:AAB03741.1 | ProteinID:AAD22281.1 | ProteinID:AEC06400.1 | ArrayExpress:AT2G15430 | EnsemblPlantsGene:AT2G15430 |
| RefSeq:AT2G15430 | TAIR:AT2G15430 | RefSeq:AT2G15430-TAIR-G | EnsemblPlants:AT2G15430.1 | TAIR:AT2G15430.1 | EMBL:AY063965 |
| EMBL:AY096406 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0000418 | GO:GO:0000419 |
| GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010374 | GO:GO:0010375 | GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 |
| InterPro:IPR036643 | RefSeq:NP_179145.1 | ProteinID:OAP11363.1 | PFAM:PF01000 | PFAM:PF01193 | PO:PO:0000293 |
| ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | UniProt:Q39211 | InterPro:RBP11-like | Symbol:RBP36A |
| InterPro:RNApol_insert_sf | SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI0000001785 | : |
Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
Coordinates
chr2:+:6733534..6735819
Molecular Weight (calculated)
35463.2 Da
IEP (calculated)
4.386
GRAVY (calculated)
-0.237
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.