Factsheet for GSMUA_Achr3P13130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	GSMUA_Achr10P...	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G509400.1	Wheat	nucleus	47.83	17.46
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	47.83	17.46
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	47.83	17.41
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	48.7	16.97
VIT_03s0180g00050.t01	Wine grape	nucleus	46.09	16.67
TraesCS5B01G158300.1	Wheat	nucleus	46.96	16.31
TraesCS5A01G160900.1	Wheat	plastid	46.96	16.31
Os09t0110400-02	Rice	nucleus	46.09	16.06
KRH50412	Soybean	nucleus	44.35	15.99
KRG89365	Soybean	nucleus	44.35	15.94
Solyc05g010300.2.1	Tomato	nucleus	41.74	15.05
HORVU5Hr1G050250.6	Barley	nucleus	47.83	14.91
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	46.96	14.88
AT2G15400.1	Thale cress	nucleus	38.26	13.79
AT2G15430.1	Thale cress	nucleus	37.39	13.48
CDY37227	Canola	nucleus	36.52	13.08
Bra039839.1-P	Field mustard	nucleus	36.52	13.08
CDY62312	Canola	nucleus	35.65	12.89
EER98576	Sorghum	nucleus	36.52	12.8
CDY36631	Canola	nucleus	34.78	12.54
Bra015218.1-P	Field mustard	nucleus	34.78	12.54
CDX71219	Canola	nucleus	29.57	12.06
Zm00001d005295_P001	Maize	extracellular	36.52	12.0
CDX71220	Canola	nucleus	34.78	9.01
GSMUA_Achr1P19210_001	Banana	cytosol	13.91	4.34
GSMUA_Achr7P06070_001	Banana	nucleus	12.17	3.78
GSMUA_Achr3P13120_001	Banana	cytosol	3.48	2.86
HORVU7Hr1G115770.2	Barley	nucleus	2.61	1.78

Protein Annotations

EnsemblPlants:GSMUA_Achr3P13130_001	EnsemblPlants:GSMUA_Achr3T13130_001	EnsemblPlantsGene:GSMUA_Achr3G13130_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	UniParc:UPI0002948AFC	UniProt:M0SE80	MapMan:35.2	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G13130_001]

Coordinates

chr3:+:9632947..9634337

Molecular Weight (calculated)

12952.3 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.470

Length

115 amino acids

Sequence
(BLAST)

001: MNLKYTNKDL MEKLTLEEKR SWVTSSPTKV FGIDPNTQQV NHLTDIDWYS FPDQLLIHKA EAMGKPGLVE IYAKEESTGA RRCPEAEEAS AWECMIPASG
101: SRYISSDMHA SVVLS

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.