Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g103160.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | Solyc01g103160.2.1 | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 84.33 | 84.59 |
| KRG89365 | Soybean | nucleus | 82.76 | 82.5 |
| KRH50412 | Soybean | nucleus | 82.45 | 82.45 |
| AT2G15430.1 | Thale cress | nucleus | 79.62 | 79.62 |
| CDY62312 | Canola | nucleus | 79.0 | 79.25 |
| Bra015218.1-P | Field mustard | nucleus | 78.37 | 78.37 |
| CDY36631 | Canola | nucleus | 78.37 | 78.37 |
| Bra039839.1-P | Field mustard | nucleus | 78.68 | 78.19 |
| CDY37227 | Canola | nucleus | 78.68 | 78.19 |
| AT2G15400.1 | Thale cress | nucleus | 74.29 | 74.29 |
| CDX71219 | Canola | nucleus | 63.95 | 72.34 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 71.16 | 71.84 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 70.85 | 71.75 |
| Os09t0110400-02 | Rice | nucleus | 73.98 | 71.52 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 69.91 | 70.79 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 73.04 | 70.61 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 72.73 | 70.09 |
| TraesCS5A01G160900.1 | Wheat | plastid | 72.1 | 69.49 |
| EER98576 | Sorghum | nucleus | 70.85 | 68.9 |
| Zm00001d005295_P001 | Maize | extracellular | 71.16 | 64.86 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 72.1 | 63.36 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 32.92 | 62.13 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 70.85 | 61.25 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 26.33 | 60.0 |
| CDX71220 | Canola | nucleus | 65.52 | 47.07 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 15.05 | 41.74 |
| Solyc12g015780.1.1 | Tomato | nucleus | 27.9 | 22.65 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS |
| InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0046983 | InterPro:IPR036603 | InterPro:IPR036643 | UniProt:K4BXK3 | PFAM:PF01000 | PFAM:PF01193 |
| ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf | SMART:SM00662 |
| SUPFAM:SSF55257 | SUPFAM:SSF56553 | EnsemblPlantsGene:Solyc05g010300.2 | EnsemblPlants:Solyc05g010300.2.1 | UniParc:UPI000276700E | : |
Description
No Description!
Coordinates
chr5:+:4454979..4460526
Molecular Weight (calculated)
35648.4 Da
IEP (calculated)
4.466
GRAVY (calculated)
-0.258
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVSYQRFP KIKVREVKDD FMKFELRDTD ASIANALRRI MIAEVPTIAI DLVEIEVNSS VLNDEFISHR LGLVPLTSER AMSMRFSRDC DACDGDGQCE
101: YCSVEFYLRV KCLSDQTLDV TSKDLLSSDH TVVPVDYSDA SSSFDNTPNK GIIIVKLRRG QELRLRAIAR KGIGKDHAKW SPAATVTFMY EPEIYINEDM
201: MESLTLEEKT ELVESSPTKV FGIDPENKQV IVVDPEAYTY DDEVLKKAEA MGKPGVVEIH AKEDSFIFTV ETTGAVKASQ LVLNAIEVLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: YCSVEFYLRV KCLSDQTLDV TSKDLLSSDH TVVPVDYSDA SSSFDNTPNK GIIIVKLRRG QELRLRAIAR KGIGKDHAKW SPAATVTFMY EPEIYINEDM
201: MESLTLEEKT ELVESSPTKV FGIDPENKQV IVVDPEAYTY DDEVLKKAEA MGKPGVVEIH AKEDSFIFTV ETTGAVKASQ LVLNAIEVLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.