Factsheet for TraesCS5A01G160900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G063500.1
TraesCS2A01G524300.1
TraesCS2B01G076200.1
TraesCS2B01G554300.1
TraesCS2D01G061700.1
TraesCS2D01G527300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	TraesCS2A01G063500.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2A01G524300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G076200.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G554300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G061700.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G527300.1	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G158300.1	Wheat	nucleus	99.09	99.09
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	88.22	92.41
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	99.4	90.63
HORVU5Hr1G050250.6	Barley	nucleus	97.89	87.8
Os09t0110400-02	Rice	nucleus	87.01	87.27
EER98576	Sorghum	nucleus	83.08	83.84
Zm00001d005295_P001	Maize	extracellular	82.78	78.29
VIT_03s0180g00050.t01	Wine grape	nucleus	71.9	74.84
KRH50412	Soybean	nucleus	71.3	73.98
KRG89365	Soybean	nucleus	71.0	73.44
CDY62312	Canola	nucleus	69.79	72.64
CDY37227	Canola	nucleus	70.39	72.59
Bra039839.1-P	Field mustard	nucleus	70.39	72.59
CDY36631	Canola	nucleus	69.79	72.41
Bra015218.1-P	Field mustard	nucleus	69.79	72.41
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	71.9	72.12
Solyc05g010300.2.1	Tomato	nucleus	69.49	72.1
AT2G15430.1	Thale cress	nucleus	68.58	71.16
CDX71219	Canola	nucleus	60.12	70.57
AT2G15400.1	Thale cress	nucleus	64.65	67.08
GSMUA_Achr3P13120_001	Banana	cytosol	25.38	60.0
GSMUA_Achr3P13130_001	Banana	cytosol	16.31	46.96
CDX71220	Canola	nucleus	62.24	46.4
TraesCS1A01G233400.1	Wheat	nucleus	26.59	24.79

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS
InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2
InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	EnsemblPlantsGene:TraesCS5A01G160900
EnsemblPlants:TraesCS5A01G160900.1	TIGR:cd07031	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:342229172..342237850

Molecular Weight (calculated)

36647.4 Da

IEP (calculated)

4.454

GRAVY (calculated)

-0.309

Length

331 amino acids

Sequence
(BLAST)

001: MERSAAGASY QRFPRVRIRE LKDEYAKFEL KDTDASMANA LRRVMIAEVP TVAIDLVEIE SNSSVLNDEF LAHRLGLIPL TSSAAMSMRF SRDCDACDGD
101: GSCEYCSVEF HLAARATDSG QTLEVTSTKD LRSTDPKVCP VDQQREYQQA LGNVDAYEPD AAGDHRGILI VKLRRGQELR LRAIARKGIG KDHAKWSPAA
201: TVTFMYEPDI CINQELMETL TLEEKQSWVE SSPTKVFDID PVTQQVTIVD PEAYTYDDEV IKKAEAMGKP GLVEINAKED SFVFTVETTG AITAYELIMN
301: AITVLRQKLD AVRLQDDDGD LGELGAHLIG G

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.