Factsheet for TraesCS2A01G524300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G160900.1
TraesCS5B01G158300.1
TraesCS5D01G165800.2
TraesCS7A01G519700.1
TraesCS7B01G435800.1
TraesCS7D01G509400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	TraesCS5A01G160900.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5B01G158300.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS5D01G165800.2	AT2G15400.1	16489121
AT1G10270.1	TraesCS7A01G519700.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7B01G435800.1	AT2G15400.1	16489121
AT1G10270.1	TraesCS7D01G509400.1	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G527300.1	Wheat	mitochondrion	74.85	72.48
TraesCS2B01G554300.1	Wheat	nucleus	87.06	71.43
TraesCS2A01G063500.1	Wheat	mitochondrion	72.43	63.79
Os05t0365500-01	Rice	nucleus	63.48	57.63
Zm00001d032900_P001	Maize	mitochondrion	54.78	55.72
OQU93028	Sorghum	mitochondrion	56.71	53.6
OQU78362	Sorghum	cytosol	44.38	53.58
GSMUA_Achr10P...	Banana	mitochondrion, plastid	38.81	51.94
VIT_12s0035g01700.t01	Wine grape	mitochondrion	34.95	46.09
KRH26275	Soybean	mitochondrion	38.21	39.9
CDY25066	Canola	cytosol	5.68	36.43
KRH06034	Soybean	mitochondrion	37.61	35.95
CDX93444	Canola	mitochondrion	33.01	35.87
CDY31037	Canola	mitochondrion	34.7	35.56
Bra018451.1-P	Field mustard	mitochondrion	34.58	35.44
CDY20645	Canola	mitochondrion	34.7	34.96
Bra019952.1-P	Field mustard	mitochondrion	33.86	34.19
CDY34898	Canola	mitochondrion	34.46	33.37
CDY21873	Canola	cytosol	4.35	33.33
Bra031706.1-P	Field mustard	mitochondrion	34.22	33.14
CDX94912	Canola	mitochondrion	33.13	33.09
AT1G10270.1	Thale cress	mitochondrion	34.22	31.0
CDY65945	Canola	cytosol	25.03	30.49
Solyc01g103160.2.1	Tomato	nucleus	35.79	30.39
CDY09648	Canola	extracellular, mitochondrion, plastid	13.66	29.97
PGSC0003DMT400064089	Potato	mitochondrion, plastid	35.07	27.99
CDY53878	Canola	mitochondrion	4.84	27.78
TraesCS3A01G214000.1	Wheat	cytosol	20.92	26.09
TraesCS1A01G352600.1	Wheat	cytosol	11.25	21.78
AT3G60960.1	Thale cress	mitochondrion	10.04	20.6
CDY25062	Canola	mitochondrion	8.83	20.11
CDY33104	Canola	mitochondrion	8.83	19.84
AT3G60980.1	Thale cress	mitochondrion	9.67	19.42
CDX95653	Canola	mitochondrion	9.19	18.95
CDY37773	Canola	mitochondrion	9.55	18.59
Bra004488.1-P	Field mustard	cytosol	9.07	18.25
CDY10671	Canola	mitochondrion	8.71	18.05
CDX80067	Canola	mitochondrion	9.43	17.93
CDX95410	Canola	cytosol	1.09	17.31
AT5G28380.1	Thale cress	cytosol	7.86	16.67
AT5G28340.1	Thale cress	cytosol	8.22	15.63
Bra000388.1-P	Field mustard	cytosol	5.44	14.52
Bra004487.1-P	Field mustard	mitochondrion	8.83	13.8
CDX80068	Canola	mitochondrion	8.83	13.8
CDX71714	Canola	cytosol	3.87	13.17
CDY37774	Canola	mitochondrion	8.1	12.18
CDY53879	Canola	cytosol	0.97	4.44

Protein Annotations

EnsemblPlants:TraesCS2A01G524300.1	EnsemblPlantsGene:TraesCS2A01G524300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:745264664..745267178

Molecular Weight (calculated)

91799.7 Da

IEP (calculated)

8.212

GRAVY (calculated)

-0.670

Length

827 amino acids

Sequence
(BLAST)

001: MAAPYRRLLL LRRLSISLSQ SHLAPHPQPA QLLSPARHFA FSSAEEAAAE RRRRKRRLRI EPPLHALRRD PSTPPPPRDP NAPRLPDTTS SLVGPRLSLH
101: NRVQALIRSG DLDGAAAASR AAVSSRVRPT VFTCNAVAAS MVRAGRPDDA VELFAFFFRR SNIVPNVVSY NTLILAHCDA ARVDDALQAY QEMLDGLTSF
201: SPSSVSYRHL TKGLVAAGRV QDALDLLRDM LNRGQGADSI VYKNLIDGYV ALDDWDKAFQ LFDELREKAT VYDGVVHTSF MEGYWKKGMD KEAMDSYSSL
301: LDRKFKMTPA TCNVLLQTLF SHDKHKEAHD LWETMVDNHN PPSFIGVNSE SYTVMVNQCF KEGRFQDAIE VFHRQPRKSV QMDVACFNNI IGKLCENGML
401: AETEQLFEEM ESKSVLPDVY TYTYLVDSCF RDGRVDDTMQ YFHKMADGRE HGPKFNIAFF NRMFQGLTEA GRIDDVLKVY GRMPDKEIKP STATFEILVK
501: ASCKEGELDR ARDLVRDMAR GGVVAPPEFR ESIVEIFKTA DRQEEIEQAF DEKPVPPPPS PRPEYRPRSL PGFASNQTPG SYATNQGKLG YGSQPFHHGN
601: AVPQILRPEG MSSEPRQPAF GSQQVQKTEV GASNTSQYGL PSPQGSPPGT SLPQGHLPEF GSSRPWQQAV GASQVQQPKF SSDSPVQSGF GTPQPQQSTH
701: IAHQTQHAGF GTPRPWQTGF GSQQAQQPGY GSQQAQQPGY GSHQMQQPGY GSQQAQQPGY DSQQAQQPRY GSQQGQQPGY GSQQVQQPGY VSHQTQQPRY
801: GSQQAQQPGY GSQQGSSQVM ALSKRSS

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.