Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95653 | Canola | mitochondrion | 97.78 | 43.89 |
| CDX95410 | Canola | cytosol | 8.89 | 30.77 |
| CDX71714 | Canola | cytosol | 22.78 | 16.87 |
| CDX80067 | Canola | mitochondrion | 37.22 | 15.4 |
| CDY33104 | Canola | mitochondrion | 30.56 | 14.95 |
| CDY37773 | Canola | mitochondrion | 35.0 | 14.82 |
| CDY25062 | Canola | mitochondrion | 28.89 | 14.33 |
| CDY10671 | Canola | mitochondrion | 31.67 | 14.29 |
| CDY21873 | Canola | cytosol | 6.11 | 10.19 |
| CDX80068 | Canola | mitochondrion | 27.78 | 9.45 |
| CDY37774 | Canola | mitochondrion | 27.78 | 9.09 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 8.33 | 3.98 |
| CDY05914 | Canola | cytosol | 3.33 | 3.97 |
| CDY53878 | Canola | mitochondrion | 2.78 | 3.47 |
| CDY65945 | Canola | cytosol | 8.89 | 2.36 |
| CDY20645 | Canola | mitochondrion | 8.89 | 1.95 |
| CDY34898 | Canola | mitochondrion | 8.89 | 1.87 |
| CDY31037 | Canola | mitochondrion | 8.33 | 1.86 |
| CDX94912 | Canola | mitochondrion | 7.78 | 1.69 |
| CDX93444 | Canola | mitochondrion | 6.67 | 1.58 |
| OQU78362 | Sorghum | cytosol | 5.0 | 1.31 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 4.44 | 1.29 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 5.0 | 1.12 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 5.0 | 1.05 |
| CDY00193 | Canola | plastid | 3.33 | 1.03 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 5.0 | 1.03 |
| OQU93028 | Sorghum | mitochondrion | 5.0 | 1.03 |
| CDX86985 | Canola | mitochondrion | 3.33 | 1.02 |
| CDY08118 | Canola | plastid | 3.33 | 1.01 |
| Os05t0365500-01 | Rice | nucleus | 5.0 | 0.99 |
| Zm00001d032900_P001 | Maize | mitochondrion | 4.44 | 0.98 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 4.44 | 0.97 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 5.0 | 0.96 |
| CDX83077 | Canola | mitochondrion, plastid | 3.33 | 0.96 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 3.33 | 0.96 |
| TraesCS2D01G061700.1 | Wheat | golgi | 5.0 | 0.95 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 5.0 | 0.89 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 5.0 | 0.89 |
| CDY25066 | Canola | cytosol | 0.56 | 0.78 |
| CDY05913 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY53879 | EnsemblPlantsGene:GSBRNA2T00011638001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFscan:PS51375 | ProteinID:CDY53879 | ProteinID:CDY53879.1 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| UniParc:UPI0004EF42A5 | UniProt:A0A078IWW9 | MapMan:35.1 | : | : | : |
Description
BnaA03g56810DBnaA03g56810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWW9]
Coordinates
chrLK033247:+:1576..2118
Molecular Weight (calculated)
20877.5 Da
IEP (calculated)
7.175
GRAVY (calculated)
-0.157
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMEHWFKQE MDEKAMECYL SSKEEFSKIY ATAANALLKV LLRYGKKTEA CLLFGQMMEK DWNLRMSDSE SCNIMVNECF KLGKISEAVE IFHKSVGTVS
101: YPQLCYRNLI TKFCEQDLLS EAEQFFAEMC SKKFFLPDVP TYRTMMDAYV KKGRVSDAVK TVNQTLDASL TYIAKKVLVM
101: YPQLCYRNLI TKFCEQDLLS EAEQFFAEMC SKKFFLPDVP TYRTMMDAYV KKGRVSDAVK TVNQTLDASL TYIAKKVLVM
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.