CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21873	Canola	cytosol	23.08	11.11
CDY10671	Canola	mitochondrion	80.77	10.53
CDY37773	Canola	mitochondrion	80.77	9.88
CDX80067	Canola	mitochondrion	80.77	9.66
CDY53879	Canola	cytosol	30.77	8.89
CDY25062	Canola	mitochondrion	34.62	4.96
CDY33104	Canola	mitochondrion	34.62	4.89
CDX95653	Canola	mitochondrion	30.77	3.99
CDX80068	Canola	mitochondrion	36.54	3.59
CDY05914	Canola	cytosol	9.62	3.31
CDY09648	Canola	extracellular, mitochondrion, plastid	23.08	3.18
CDY37774	Canola	mitochondrion	32.69	3.09
CDY53878	Canola	mitochondrion	5.77	2.08
CDY65945	Canola	cytosol	21.15	1.62
GSMUA_Achr10P...	Banana	mitochondrion, plastid	19.23	1.62
CDY31037	Canola	mitochondrion	21.15	1.36
CDY20645	Canola	mitochondrion	21.15	1.34
CDX94912	Canola	mitochondrion	21.15	1.33
CDX93444	Canola	mitochondrion	19.23	1.31
CDY34898	Canola	mitochondrion	21.15	1.29
TraesCS2A01G524300.1	Wheat	mitochondrion	17.31	1.09
OQU78362	Sorghum	cytosol	13.46	1.02
HORVU2Hr1G011400.1	Barley	cytosol	15.38	1.0
Os05t0365500-01	Rice	nucleus	17.31	0.99
TraesCS2A01G063500.1	Wheat	mitochondrion	17.31	0.96
TraesCS2D01G061700.1	Wheat	golgi	17.31	0.95
TraesCS2D01G527300.1	Wheat	mitochondrion	15.38	0.94
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	15.38	0.92
TraesCS2B01G554300.1	Wheat	nucleus	17.31	0.89
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	17.31	0.89
CDY08118	Canola	plastid	9.62	0.84
CDX71714	Canola	cytosol	3.85	0.82
OQU93028	Sorghum	mitochondrion	13.46	0.8
Zm00001d032900_P001	Maize	mitochondrion	11.54	0.74
CDX83077	Canola	mitochondrion, plastid	7.69	0.64
CDX68524	Canola	cytosol, mitochondrion, plastid	7.69	0.64
CDY00193	Canola	plastid	5.77	0.52
CDX86985	Canola	mitochondrion	5.77	0.51
CDY25066	Canola	cytosol	0.0	0.0
CDY05913	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX95410	EnsemblPlantsGene:GSBRNA2T00101139001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF12854	PFscan:PS51375
ProteinID:CDX95410	ProteinID:CDX95410.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EF35F3	MapMan:35.2	:

Description

BnaC04g27480D

Coordinates

chrLK031888:-:1273220..1273378

Molecular Weight (calculated)

5830.1 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.319

Length

52 amino acids

Sequence
(BLAST)

1: MCSDKDLSPP PDVSTFRSMV NGYVRSGRVD DAIKISNKLA ILKLRKVSIY ED

Best Arabidopsis Sequence Match ( AT5G28380.2 )
(BLAST)

001: MLSCNLIIKA HCDQGSVDHA LELYRHILLD GSLAPGIETY RILTKALVGA KRLDEACDVV RSMSRCDFAV YDILIRGFLD KGKFVRASQI FEELKGPNSK
101: LPWRNYHKAI AIFNVSFMDY WFKQGKDEEA MEIFATLEHA ELLNTISGNG VLKCLVEHGR KTEAWELFLD MIEICDSETV GIIMSKEGFF GEKTIPFERV
201: RRTCYTRMIA SLCQQGNMLE AEKLFADMFA DVDGDDLLAG PDVSTFRAMI NGYVKVGRVD DAIKTLNKMK ISNLRKLSIH QAT

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q3E8X7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.