Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G050250.6 | |
| HORVU7Hr1G115770.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10270.1 | HORVU5Hr1G050250.6 | AT2G15400.1 | 16489121 |
| AT1G10270.1 | HORVU7Hr1G115770.2 | AT2G15400.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 86.39 | 79.18 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 78.78 | 67.2 |
| TraesCS2D01G061700.1 | Wheat | golgi | 78.4 | 66.11 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 80.27 | 63.41 |
| OQU78362 | Sorghum | cytosol | 47.07 | 55.04 |
| Os05t0365500-01 | Rice | nucleus | 53.31 | 46.87 |
| Zm00001d032900_P001 | Maize | mitochondrion | 44.07 | 43.42 |
| OQU93028 | Sorghum | mitochondrion | 46.57 | 42.63 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 28.59 | 37.05 |
| CDY21873 | Canola | cytosol | 4.49 | 33.33 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 25.09 | 32.06 |
| CDY65945 | Canola | cytosol | 24.84 | 29.31 |
| KRH26275 | Soybean | mitochondrion | 27.72 | 28.03 |
| KRH06034 | Soybean | mitochondrion | 28.34 | 26.24 |
| Bra018451.1-P | Field mustard | mitochondrion | 25.84 | 25.65 |
| CDY31037 | Canola | mitochondrion | 25.72 | 25.53 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 11.86 | 25.2 |
| CDY20645 | Canola | mitochondrion | 25.22 | 24.6 |
| CDX93444 | Canola | mitochondrion | 23.35 | 24.57 |
| Bra019952.1-P | Field mustard | mitochondrion | 25.09 | 24.54 |
| CDX94912 | Canola | mitochondrion | 24.84 | 24.03 |
| CDY34898 | Canola | mitochondrion | 24.97 | 23.42 |
| Bra031706.1-P | Field mustard | mitochondrion | 24.84 | 23.3 |
| Solyc01g103160.2.1 | Tomato | nucleus | 27.96 | 23.0 |
| AT1G10270.1 | Thale cress | mitochondrion | 25.59 | 22.45 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 28.21 | 21.81 |
| CDY25066 | Canola | cytosol | 3.12 | 19.38 |
| HORVU3Hr1G052280.1 | Barley | cytosol, plastid | 14.36 | 17.35 |
| CDX95410 | Canola | cytosol | 1.0 | 15.38 |
| HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 12.61 | 15.07 |
| AT5G28380.1 | Thale cress | cytosol | 6.62 | 13.59 |
| Bra000388.1-P | Field mustard | cytosol | 5.24 | 13.55 |
| AT5G28340.1 | Thale cress | cytosol | 6.49 | 11.95 |
| AT3G60960.1 | Thale cress | mitochondrion | 5.87 | 11.66 |
| CDY25062 | Canola | mitochondrion | 5.24 | 11.57 |
| CDY33104 | Canola | mitochondrion | 5.24 | 11.41 |
| AT3G60980.1 | Thale cress | mitochondrion | 5.74 | 11.16 |
| CDX95653 | Canola | mitochondrion | 5.37 | 10.72 |
| Bra004488.1-P | Field mustard | cytosol | 5.49 | 10.71 |
| CDY37773 | Canola | mitochondrion | 5.49 | 10.35 |
| CDX71714 | Canola | cytosol | 3.12 | 10.29 |
| CDX80067 | Canola | mitochondrion | 5.49 | 10.11 |
| CDY10671 | Canola | mitochondrion | 4.74 | 9.52 |
| CDY53878 | Canola | mitochondrion | 1.62 | 9.03 |
| Bra004487.1-P | Field mustard | mitochondrion | 4.74 | 7.18 |
| CDX80068 | Canola | mitochondrion | 4.74 | 7.18 |
| CDY37774 | Canola | mitochondrion | 4.74 | 6.91 |
| CDY53879 | Canola | cytosol | 1.12 | 5.0 |
| HORVU3Hr1G052300.1 | Barley | plastid | 0.75 | 4.48 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A287H2P4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:HORVU2Hr1G011400 | EnsemblPlants:HORVU2Hr1G011400.1 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 |
| PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 | InterPro:Pentatricopeptide_repeat |
| SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000B46FD95 | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:22747410..22749999
Molecular Weight (calculated)
84851.8 Da
IEP (calculated)
6.763
GRAVY (calculated)
-0.773
Length
801 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHLRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF RRSSIVPNVV SYNTLILAHC EAGRVDEALR AYQEMLDGAT SFPPSAVSYR HLTKGLVAAG
101: RIQDALELLH SMYHRGQGAD SIVYKNLIDG YIGLDDWDKA SELFAELTEK ATVYDGVVHT SFMEGYWKKG MDKEAMDNYK SLLDRNFKMT PATCNVLLET
201: LFKHDKHKEA SDLWETMIDN HSPPSFIGMN SESYNVMVNQ CFKEGRFQDA IEVFHRQPRR NVQMDVGCFN NIIGKLCEKG MLAEAEKLFE EMESKSVLPD
301: VYTYTFLVDL CFKEGRVDDT MQYFYKMADG REHGPKFNIG FFNRMFEGLS QGGRIDDALK VYGRMADKEI KPNTTTFEIL VNALCKEGEL DRALDLVRDM
401: ARGGVVATPE FRESVGEIFK NADRHEEIEK AFEEKPVPLP PQPRPEVRPR SSPQGLPGFA SNQTQSSYTP NQGQPGYGSA QPFHPGNAAS QVRQPEWMSP
501: KSQQPVSGNQ QAENTEIRAS NKWQHGLSSP QEKQTGIAMP QDGRQPEFGT SRPWQQTAGS PQVQQPNFGS ATPVQPGFGS RPHIAHETQH PGFGTSRPGQ
601: IAYGAQQAQQ PGHGAQQAQQ SGHGAHQAQQ SGHGAHQAQQ SGYGGHQAQQ PGYGAHQAQQ PGYGAHQAQQ PGYGAHQTQQ PGYGAHQAQQ PGYVTRQAEP
701: LGYGAHQAQQ PMYGAHQAHQ PGYGTHQAQQ PRYGARQPSF GAPEAPQSSL GSAQSLPHYG RVGNEHDQLG SSRKGGPTFS TQPLQTAEAP DDMAVKYNQH
801: Y
101: RIQDALELLH SMYHRGQGAD SIVYKNLIDG YIGLDDWDKA SELFAELTEK ATVYDGVVHT SFMEGYWKKG MDKEAMDNYK SLLDRNFKMT PATCNVLLET
201: LFKHDKHKEA SDLWETMIDN HSPPSFIGMN SESYNVMVNQ CFKEGRFQDA IEVFHRQPRR NVQMDVGCFN NIIGKLCEKG MLAEAEKLFE EMESKSVLPD
301: VYTYTFLVDL CFKEGRVDDT MQYFYKMADG REHGPKFNIG FFNRMFEGLS QGGRIDDALK VYGRMADKEI KPNTTTFEIL VNALCKEGEL DRALDLVRDM
401: ARGGVVATPE FRESVGEIFK NADRHEEIEK AFEEKPVPLP PQPRPEVRPR SSPQGLPGFA SNQTQSSYTP NQGQPGYGSA QPFHPGNAAS QVRQPEWMSP
501: KSQQPVSGNQ QAENTEIRAS NKWQHGLSSP QEKQTGIAMP QDGRQPEFGT SRPWQQTAGS PQVQQPNFGS ATPVQPGFGS RPHIAHETQH PGFGTSRPGQ
601: IAYGAQQAQQ PGHGAQQAQQ SGHGAHQAQQ SGHGAHQAQQ SGYGGHQAQQ PGYGAHQAQQ PGYGAHQAQQ PGYGAHQTQQ PGYGAHQAQQ PGYVTRQAEP
701: LGYGAHQAQQ PMYGAHQAHQ PGYGTHQAQQ PRYGARQPSF GAPEAPQSSL GSAQSLPHYG RVGNEHDQLG SSRKGGPTFS TQPLQTAEAP DDMAVKYNQH
801: Y
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.