Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G60980.1 | Thale cress | mitochondrion | 57.61 | 33.98 |
| CDY33104 | Canola | mitochondrion | 46.5 | 30.71 |
| CDY25062 | Canola | mitochondrion | 45.27 | 30.3 |
| CDY53879 | Canola | cytosol | 16.87 | 22.78 |
| CDY25066 | Canola | cytosol | 10.7 | 20.16 |
| CDX95653 | Canola | mitochondrion | 32.1 | 19.45 |
| CDY53878 | Canola | mitochondrion | 9.05 | 15.28 |
| CDX80067 | Canola | mitochondrion | 27.16 | 15.17 |
| CDY37773 | Canola | mitochondrion | 25.1 | 14.35 |
| CDY10671 | Canola | mitochondrion | 19.34 | 11.78 |
| CDX80068 | Canola | mitochondrion | 21.4 | 9.83 |
| CDY37774 | Canola | mitochondrion | 22.22 | 9.82 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 12.35 | 7.96 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 17.7 | 6.86 |
| CDY65945 | Canola | cytosol | 17.7 | 6.33 |
| CDX93444 | Canola | mitochondrion | 18.52 | 5.91 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 14.81 | 5.83 |
| CDX94912 | Canola | mitochondrion | 18.93 | 5.56 |
| CDY31037 | Canola | mitochondrion | 18.11 | 5.45 |
| KRH26275 | Soybean | mitochondrion | 16.87 | 5.18 |
| CDY20645 | Canola | mitochondrion | 17.28 | 5.12 |
| CDY34898 | Canola | mitochondrion | 17.7 | 5.04 |
| OQU78362 | Sorghum | cytosol | 13.58 | 4.82 |
| Solyc01g103160.2.1 | Tomato | nucleus | 18.52 | 4.62 |
| KRH06034 | Soybean | mitochondrion | 16.05 | 4.51 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 18.52 | 4.34 |
| Zm00001d032900_P001 | Maize | mitochondrion | 14.4 | 4.31 |
| OQU93028 | Sorghum | mitochondrion | 14.4 | 4.0 |
| Os05t0365500-01 | Rice | nucleus | 14.81 | 3.95 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 13.17 | 3.87 |
| CDX95410 | Canola | cytosol | 0.82 | 3.85 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 13.17 | 3.75 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 14.4 | 3.73 |
| TraesCS2D01G061700.1 | Wheat | golgi | 14.4 | 3.68 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 14.4 | 3.45 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 13.58 | 3.27 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 10.29 | 3.12 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 10.29 | 2.86 |
| CDX83077 | Canola | mitochondrion, plastid | 4.12 | 1.59 |
| CDY00193 | Canola | plastid | 3.7 | 1.55 |
| CDX86985 | Canola | mitochondrion | 3.7 | 1.53 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 3.7 | 1.43 |
| CDY08118 | Canola | plastid | 3.29 | 1.34 |
| CDY05913 | Canola | cytosol | 2.47 | 1.23 |
| CDY05914 | Canola | cytosol | 0.0 | 0.0 |
| CDY21873 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX71714 | EnsemblPlantsGene:GSBRNA2T00155403001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | ProteinID:CDX71714 | ProteinID:CDX71714.1 | UniParc:UPI0004EBA6DF | MapMan:35.1 | : |
Description
BnaC08g31600D
Coordinates
chrLK031795:+:117150..117942
Molecular Weight (calculated)
28400.9 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.531
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNKRHKDA YDLYDFFFNK HKLIPTNRCC NCIIESRFQQ GLVDEALDFH RSIKYRGYPN DDTLRAWELP YRRPDHVAFN NLIRGFLDLG NLDKANLVLD
101: EFKRAWSAFA LSSSWHKPDS LSLEYEQRLA LLMATFMEYW FKQGKEMEAM KCYEPCVGVA NNNLPPDTGN ALLKILLKYC KKTHAWALYH DMFDQSQSGI
201: SSRPLDSGTV KIMVGECFDM GRCSQAIDTY NKARAKNNFL DDR
101: EFKRAWSAFA LSSSWHKPDS LSLEYEQRLA LLMATFMEYW FKQGKEMEAM KCYEPCVGVA NNNLPPDTGN ALLKILLKYC KKTHAWALYH DMFDQSQSGI
201: SSRPLDSGTV KIMVGECFDM GRCSQAIDTY NKARAKNNFL DDR
001: MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g60980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LEX5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.