CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004488.1-P	Field mustard	cytosol	94.48	100.0
CDY37773	Canola	mitochondrion	89.66	91.76
CDX95410	Canola	cytosol	9.66	80.77
CDY10671	Canola	mitochondrion	59.54	64.91
CDY25066	Canola	cytosol	13.33	44.96
CDY53879	Canola	cytosol	15.4	37.22
CDX95653	Canola	mitochondrion	28.74	31.17
CDY33104	Canola	mitochondrion	23.45	27.72
CDY25062	Canola	mitochondrion	22.99	27.55
CDX71714	Canola	cytosol	15.17	27.16
CDY53878	Canola	mitochondrion	8.74	26.39
CDX80068	Canola	mitochondrion	25.06	20.6
CDY37774	Canola	mitochondrion	24.37	19.27
CDY09648	Canola	extracellular, mitochondrion, plastid	15.63	18.04
GSMUA_Achr10P...	Banana	mitochondrion, plastid	17.93	12.62
CDY21873	Canola	cytosol	2.76	11.11
CDX93444	Canola	mitochondrion	19.31	11.04
CDX94912	Canola	mitochondrion	19.77	10.39
CDY31037	Canola	mitochondrion	19.08	10.29
CDY34898	Canola	mitochondrion	20.0	10.19
CDY20645	Canola	mitochondrion	19.08	10.11
Zm00001d032900_P001	Maize	mitochondrion	18.39	9.84
TraesCS2A01G524300.1	Wheat	mitochondrion	17.93	9.43
OQU93028	Sorghum	mitochondrion	18.39	9.14
TraesCS2D01G527300.1	Wheat	mitochondrion	17.93	9.13
CDY65945	Canola	cytosol	14.25	9.13
Os05t0365500-01	Rice	nucleus	18.62	8.89
TraesCS2A01G063500.1	Wheat	mitochondrion	18.16	8.41
TraesCS2D01G061700.1	Wheat	golgi	18.16	8.32
TraesCS2B01G554300.1	Wheat	nucleus	18.16	7.84
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	17.7	7.59
OQU78362	Sorghum	cytosol	11.95	7.59
CDY08118	Canola	plastid	8.28	6.04
CDY00193	Canola	plastid	7.82	5.85
CDX83077	Canola	mitochondrion, plastid	8.28	5.73
CDX86985	Canola	mitochondrion	7.59	5.6
CDX68524	Canola	cytosol, mitochondrion, plastid	8.05	5.57
HORVU2Hr1G011400.1	Barley	cytosol	10.11	5.49
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	9.89	4.92
CDY05914	Canola	cytosol	1.15	3.31
CDY05913	Canola	cytosol	3.45	3.08

Protein Annotations

EnsemblPlants:CDX80067	EnsemblPlantsGene:GSBRNA2T00132957001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF13041	PFscan:PS51375	ProteinID:CDX80067	ProteinID:CDX80067.1	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0004EEEC60	MapMan:35.1	:	:	:

Description

BnaA05g00890D

Coordinates

chrLK031819:-:1643626..1644933

Molecular Weight (calculated)

49530.3 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.270

Length

435 amino acids

Sequence
(BLAST)

001: MSLTRRINLV VGLSKSLQFS NRRHMSTGVA SATVARYPLG KDLSWLPRNP TSEDVNRAAD LVKGRPVSLL YRVLTMIELS DVDGAVELAR LCVLKDDSRR
101: HDTILICNAV IGAMCQAKRF EQGIGLFHYF FNENNIVPNI ASFNYVIKAF CELGRVDDAL QLYRHAARFG PDKETFSLLT QALVHAYGYE EAGIFVGLSR
201: CLTTADDWTP MLIEIRGRLD QMNAEDADDY FHTNRLKFDD DDDDGVFKSI ATIFVEYWLK HGNEEKAMEC YSTIRTWESL PATTGNTLLR ILLENCKRTE
301: AGALIEVNAK DLYHNMLKKH KRFDSETINI MVDYWFDIGE VNKAMETFNE SQQGRKRMVR CYCNVVARLC ERGMMSEAEG LFEDMCSDKD LSPPDVSTFR
401: SMVNGYVRAG RVDDAIKTSN KLAILKLRKV SIYED

Best Arabidopsis Sequence Match ( AT3G60960.2 )
(BLAST)

001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.