Factsheet for HORVU2Hr1G011350.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G050250.6
HORVU7Hr1G115770.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	HORVU5Hr1G050250.6	AT2G15400.1	16489121
AT1G10270.1	HORVU7Hr1G115770.2	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G011400.1	Barley	cytosol	79.18	86.39
TraesCS2A01G063500.1	Wheat	mitochondrion	78.6	73.16
TraesCS2D01G061700.1	Wheat	golgi	78.49	72.21
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	81.92	70.61
OQU78362	Sorghum	cytosol	43.13	55.04
Os05t0365500-01	Rice	nucleus	51.6	49.51
Zm00001d032900_P001	Maize	mitochondrion	40.39	43.42
OQU93028	Sorghum	mitochondrion	42.11	42.06
GSMUA_Achr10P...	Banana	mitochondrion, plastid	25.97	36.73
CDY21873	Canola	cytosol	4.12	33.33
VIT_12s0035g01700.t01	Wine grape	mitochondrion	23.11	32.22
CDY65945	Canola	cytosol	23.68	30.49
KRH26275	Soybean	mitochondrion	25.63	28.28
KRH06034	Soybean	mitochondrion	26.54	26.82
CDY31037	Canola	mitochondrion	24.26	26.27
Bra018451.1-P	Field mustard	mitochondrion	24.26	26.27
Bra019952.1-P	Field mustard	mitochondrion	23.8	25.4
CDY09648	Canola	extracellular, mitochondrion, plastid	10.87	25.2
CDX94912	Canola	mitochondrion	23.68	25.0
CDY20645	Canola	mitochondrion	23.46	24.97
CDX93444	Canola	mitochondrion	21.74	24.97
CDY34898	Canola	mitochondrion	23.91	24.47
Bra031706.1-P	Field mustard	mitochondrion	23.8	24.36
Solyc01g103160.2.1	Tomato	nucleus	26.32	23.61
AT1G10270.1	Thale cress	mitochondrion	24.14	23.11
PGSC0003DMT400064089	Potato	mitochondrion, plastid	26.54	22.39
HORVU3Hr1G052280.1	Barley	cytosol, plastid	13.27	17.5
CDY25066	Canola	cytosol	2.52	17.05
CDX95410	Canola	cytosol	0.92	15.38
HORVU1Hr1G080900.3	Barley	cytosol, plastid	11.78	15.37
Bra000388.1-P	Field mustard	cytosol	4.69	13.23
AT5G28380.1	Thale cress	cytosol	5.84	13.08
CDY25062	Canola	mitochondrion	4.81	11.57
AT5G28340.1	Thale cress	cytosol	5.72	11.49
CDY33104	Canola	mitochondrion	4.81	11.41
AT3G60960.1	Thale cress	mitochondrion	5.15	11.17
AT3G60980.1	Thale cress	mitochondrion	5.26	11.16
CDX95653	Canola	mitochondrion	4.92	10.72
Bra004488.1-P	Field mustard	cytosol	4.92	10.46
CDX71714	Canola	cytosol	2.86	10.29
CDY37773	Canola	mitochondrion	4.92	10.12
CDX80067	Canola	mitochondrion	4.92	9.89
CDY10671	Canola	mitochondrion	4.23	9.27
CDY53878	Canola	mitochondrion	1.49	9.03
CDX80068	Canola	mitochondrion	4.12	6.81
Bra004487.1-P	Field mustard	mitochondrion	4.12	6.81
CDY37774	Canola	mitochondrion	4.12	6.55
CDY53879	Canola	cytosol	1.03	5.0
HORVU3Hr1G052300.1	Barley	plastid	0.57	3.73

Protein Annotations

EnsemblPlants:HORVU2Hr1G011350.4	EnsemblPlantsGene:HORVU2Hr1G011350	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B464F66	UniProt:A0A287H2I2	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr2H:+:22684708..22687617

Molecular Weight (calculated)

94522.3 Da

IEP (calculated)

6.830

GRAVY (calculated)

-0.914

Length

874 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXRR SSIVPNVVSY NTLILAHCEA GRVDEALRAY QEMLDGATSF PPSAVSYRHL TKGLVAAGRI QDALELLHSM YHRGQGADSI
101: VYKNLIDGYI GLDDWDKASE LFAELTEKAT VYDGVVHTSF MEGYWKKGMD KEAMDNYKSL LDRNFKMTPA TCNVLLETLF KHDKHKEASD LWETMIDNHS
201: PPSFIGMNSE SYNVMVNQCF KEGRFQDAIE VFHRQPRRNV QMDVGCFNNI IGKLCEKGML AEAEKLFEEM ESKSVLPDVY TYTFLVDLCF KEGRVDDTMQ
301: YFYKMADGRE HGPKFNIGFF NRMFEGLSQG GRIDDALKVY GRMADKEIKP NTTTFEILVN ALCKEGELDR ALDLVRDMAR GGVVATPEFR ESVGEIFKNA
401: DRHEEIEKAF EEKPVPLPPQ PRPEVRPRSS PQGLPGFASN QTQSSYTPNQ GQPGYGSAQP FHPGNAASQV RQPEWMSPKS QQPVSGNQQA ENTEIRASNK
501: WQHGLSSPQE KQTGIAMPQD GRQPEFGTSR PWQQTAGSPQ VQQPNFGSAT PVQPGFGTHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ
601: TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ
701: TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ TQQPGYGAHQ AQQPGYGAHQ AQQPGYVTRQ AEPLGYGAHQ AQQPMYGAHQ AHQPGYGTHQ
801: AQQPRYGARQ PSFGAPEAPQ SSLGSAQSLP HYGRVGNEHD QLGSSRKGGP TFSTQPLQTA EAPDDMAVKY NQHY

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.