Factsheet for Bra018451.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015218.1-P
Bra039839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Bra015218.1-P	AT2G15400.1	16489121
AT1G10270.1	Bra039839.1-P	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31037	Canola	mitochondrion	99.75	99.75
Bra019952.1-P	Field mustard	mitochondrion	63.2	62.27
Bra031706.1-P	Field mustard	mitochondrion	63.57	60.07
AT1G10270.1	Thale cress	mitochondrion	63.57	56.19
VIT_12s0035g01700.t01	Wine grape	mitochondrion	39.16	50.4
GSMUA_Achr10P...	Banana	mitochondrion, plastid	32.34	42.23
KRH26275	Soybean	mitochondrion	40.77	41.54
KRH06034	Soybean	mitochondrion	40.4	37.69
TraesCS2A01G524300.1	Wheat	mitochondrion	35.44	34.58
Zm00001d032900_P001	Maize	mitochondrion	34.57	34.32
TraesCS2D01G527300.1	Wheat	mitochondrion	35.81	33.84
Os05t0365500-01	Rice	nucleus	37.55	33.26
Solyc01g103160.2.1	Tomato	nucleus	38.54	31.93
TraesCS2A01G063500.1	Wheat	mitochondrion	36.93	31.74
OQU93028	Sorghum	mitochondrion	34.32	31.66
TraesCS2D01G061700.1	Wheat	golgi	37.05	31.47
PGSC0003DMT400064089	Potato	mitochondrion, plastid	37.3	29.05
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	36.43	28.99
TraesCS2B01G554300.1	Wheat	nucleus	36.06	28.87
OQU78362	Sorghum	cytosol	24.41	28.76
HORVU2Hr1G011400.1	Barley	cytosol	25.65	25.84
Bra019587.1-P	Field mustard	cytosol	16.98	24.38
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	26.27	24.26
Bra017999.1-P	Field mustard	cytosol	16.6	23.76
Bra029944.1-P	Field mustard	mitochondrion, plastid	18.96	23.68
Bra004488.1-P	Field mustard	cytosol	9.54	18.73
Bra000388.1-P	Field mustard	cytosol	7.06	18.39
Bra004487.1-P	Field mustard	mitochondrion	10.9	16.64

Protein Annotations

EnsemblPlants:Bra018451.1	EnsemblPlants:Bra018451.1-P	EnsemblPlantsGene:Bra018451	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0002547F4C	UniProt:M4DPL0	MapMan:35.1	:	:

Description

AT1G10270 (E=6e-247) GRP23 | GRP23 (GLUTAMINE-RICH PROTEIN23); binding

Coordinates

chrA05:-:8282070..8284493

Molecular Weight (calculated)

90457.8 Da

IEP (calculated)

8.127

GRAVY (calculated)

-0.736

Length

807 amino acids

Sequence
(BLAST)

001: MPLCYLLRRL SSAATTIRIP TPISHIHQRF YNISTSPENE PPDTNHSPPI PHPTIPHRTT SFSSAEEAAA ERRRRKRRLR IEPPLHALRR DPSSPPPKRD
101: PRLPDSTSSL VGPRLNLHNR VQSLIRASDL DAASKLARFS KTRPTVFTCN AIIAAMYRAE RYGESISLFD YFFKKSSLVP NVVSYNQIIN AHCDEGHVEE
201: ALEVYRYILT NSPFAPSSVT YRHLTKGLVS SGRLGDAASL LREMLSKGQA ADSIVYNNLI KGYLELGDLI KANEFFDELK SKCTVYDGIV NATFMEYWFE
301: KGDDEEAMEC YRDLLEKRFR MYPHTGNVLL GVFLKYGKKS EAWGLFDEML DNHTPPNISS VNSETVSIMV NECFEMGEFE EAVEAFKRVG RKENSRRFVM
401: DNVGYCNIVT RFCEYGMLAE AERLFAEGVG KSLPPDAASH RVMIDAYLKA GRVEDALKML DRMVDVNLRV VADFGTRVFG ELIENGRVRE CAEVLSKMGE
501: KEPKPDPSVY EVVVRGLCDG GALEEAKDVV GQMVGYGVGF AHVLREFIIE TFEKAGRREE IEKTLNTVNR PVRNSVQSGK TPPSVSSVLG ANGTAGQTAG
601: GTYKANNGQN PSRSNTSVNQ QQQPWSSQTA GKQPPSWSSQ PPGYQQQQYW SQKPGWSSPS GHQQSWPNQA TGQQQPWANH NTAHQQSWGN QTDGQQKPWD
701: NQSTNHHQQP LASQNTGHQQ QRANQTTGQQ KPWTNRTAGQ QSAWTGKQKQ WSNQTANHQQ PQWPSPTSGH VANQAPWSNS ENSHLPQQQE PGSSHEWQDG
801: KVAELSK

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.