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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • cytosol 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g103160.2.1 Tomato nucleus 66.6 70.84
VIT_12s0035g01700.t01 Wine grape mitochondrion 35.42 58.53
GSMUA_Achr10P... Banana mitochondrion, plastid 28.09 47.09
KRH26275 Soybean mitochondrion 34.46 45.08
KRH06034 Soybean mitochondrion 36.68 43.93
CDX93444 Canola mitochondrion 28.86 39.29
CDY34898 Canola mitochondrion 31.76 38.52
Bra031706.1-P Field mustard mitochondrion 31.66 38.41
CDY20645 Canola mitochondrion 30.41 38.37
CDX94912 Canola mitochondrion 30.12 37.68
CDY31037 Canola mitochondrion 29.25 37.55
Bra019952.1-P Field mustard mitochondrion 29.63 37.48
Bra018451.1-P Field mustard mitochondrion 29.05 37.3
Zm00001d032900_P001 Maize mitochondrion 29.05 37.02
AT1G10270.1 Thale cress mitochondrion 32.53 36.91
OQU93028 Sorghum mitochondrion 30.89 36.57
CDY65945 Canola cytosol 23.55 35.94
Os05t0365500-01 Rice nucleus 31.18 35.46
TraesCS2A01G524300.1 Wheat mitochondrion 27.99 35.07
TraesCS2D01G527300.1 Wheat mitochondrion 27.7 33.61
TraesCS2A01G063500.1 Wheat mitochondrion 30.12 33.23
TraesCS2D01G061700.1 Wheat golgi 30.31 33.05
OQU78362 Sorghum cytosol 20.85 31.53
TraesCS2B01G076200.1 Wheat golgi, nucleus, plastid 30.31 30.97
TraesCS2B01G554300.1 Wheat nucleus 29.92 30.75
HORVU2Hr1G011400.1 Barley cytosol 21.81 28.21
HORVU2Hr1G011350.4 Barley cytosol, mitochondrion 22.39 26.54
PGSC0003DMT400023464 Potato plastid 15.15 24.08
AT3G60980.1 Thale cress mitochondrion 8.78 22.09
CDY25062 Canola mitochondrion 7.05 20.11
CDY33104 Canola mitochondrion 7.05 19.84
CDX71714 Canola cytosol 4.34 18.52
Protein Annotations
Gene3D:1.25.40.10EntrezGene:102596557MapMan:35.1ncoils:CoilGO:GO:0000003GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005739GO:GO:0007275GO:GO:0008150GO:GO:0009790GO:GO:0009791
GO:GO:0009793GO:GO:0009987GO:GO:0051301InterPro:IPR002885InterPro:IPR011990UniProt:M1CBQ1
PFAM:PF01535PFAM:PF13041EnsemblPlantsGene:PGSC0003DMG400024905PGSC:PGSC0003DMG400024905EnsemblPlants:PGSC0003DMT400064089PFscan:PS51375
PANTHER:PTHR24015PANTHER:PTHR24015:SF393InterPro:Pentatricopeptide_repeatSUPFAM:SSF48452SUPFAM:SSF81901TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sfUniParc:UPI000294EB74RefSeq:XP_015165015.1SEG:seg::
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024905]
Coordinates
chr1:-:79919099..79923290
Molecular Weight (calculated)
114321.0 Da
IEP (calculated)
9.150
GRAVY (calculated)
-0.623
Length
1036 amino acids
Sequence
(BLAST)
0001: MALYAILLRS LRRSSATAAV FRTQITTSVH NPQNPNFLLP QRSFAFSSAE EAAAERRRRK RRLRIEPPIN ALRRDPLPRG PPSPDDPRSR LPDTTSALVG
0101: PRLNLHNRVQ SLIRAGDLDS AAAVARHAVF SNTRPTVFTC NAIIGAMYRS GRYNDAKALF QYFFNQYNII PNVVSYNHVI VSHCEAGEVD EGLKVYSHII
0201: ENAPFSPSAV TYRHLTKGLI DSDRIAEAVD LLREMLNKGH GADSLVYNNL ILGFLNLGNL EKANELFDEL KERCTVYDGV VNATFMDWFF KQGKVKEAME
0301: SYRSLLDKKY RMVPATCNVL LEVLLRHGRE TEAWALFDAM LDDHTPPTFQ AVNSDTFNLI VNECFRLGKV SEALETFKKV GKGLKTRPFA MDVAGYNNMI
0401: TKLSELEMME EAEKYYMELC NKSLSPDVTT YRTMIEAYVK MDNVEGTLEK YTKMVEAGLR VIPVYAEKWF NFLIEKGKVA ECVPILTKMG EREPKPDVTT
0501: YDIVIRALCG EGNYDASSNL VIQTINYGVG LTSSLREFLL ESFGNQGRRE EIERVFATKP TYIPPSTPPR GQVPWLSQLP RQLPGTSRAA GQQTPPASLS
0601: SQVQGRPSAL NSTWQQNSPP SFVGGQQQAS SPSFIGGQGS SQMQGQQSAP NPRWQQASPP SFVAGQGSHQ LQGQQADPNL RWQQASPPTF VAGQGSHQMQ
0701: GQQSAPNPRW QQASPPSYTA GQGSQQMQGQ QSEPNPRWQQ ASPPSFVAGQ GSHQMQGQQS EPNPRWQQAS PPSFVAGQGS HQMQGQQSEP NPRWQQASPP
0801: SFVAGQGSHQ MQGQQSAPNP RWQQASPPSF IAGQVPQQMQ GQPSTFARNS HQASPSFIQQ GASPPSFMAG QGSQQMQGQP SAFARNVQQA SQPSFVPQDA
0901: SSHSFMAGRS QQMQGQPSGF THVSQWSSPP TYMAGQGGQH QNQGPPSGFT QTPYKEASPY SMDGQRAHSM QGLTSGPVHT PLNEISHTSQ SVRGPASAFA
1001: HVPGQYVRHQ ATEKASSQGD NIEQYQYPEV ARQGRM
Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.