Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- cytosol 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g103160.2.1 | Tomato | nucleus | 66.6 | 70.84 |
VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 35.42 | 58.53 |
GSMUA_Achr10P... | Banana | mitochondrion, plastid | 28.09 | 47.09 |
KRH26275 | Soybean | mitochondrion | 34.46 | 45.08 |
KRH06034 | Soybean | mitochondrion | 36.68 | 43.93 |
CDX93444 | Canola | mitochondrion | 28.86 | 39.29 |
CDY34898 | Canola | mitochondrion | 31.76 | 38.52 |
Bra031706.1-P | Field mustard | mitochondrion | 31.66 | 38.41 |
CDY20645 | Canola | mitochondrion | 30.41 | 38.37 |
CDX94912 | Canola | mitochondrion | 30.12 | 37.68 |
CDY31037 | Canola | mitochondrion | 29.25 | 37.55 |
Bra019952.1-P | Field mustard | mitochondrion | 29.63 | 37.48 |
Bra018451.1-P | Field mustard | mitochondrion | 29.05 | 37.3 |
Zm00001d032900_P001 | Maize | mitochondrion | 29.05 | 37.02 |
AT1G10270.1 | Thale cress | mitochondrion | 32.53 | 36.91 |
OQU93028 | Sorghum | mitochondrion | 30.89 | 36.57 |
CDY65945 | Canola | cytosol | 23.55 | 35.94 |
Os05t0365500-01 | Rice | nucleus | 31.18 | 35.46 |
TraesCS2A01G524300.1 | Wheat | mitochondrion | 27.99 | 35.07 |
TraesCS2D01G527300.1 | Wheat | mitochondrion | 27.7 | 33.61 |
TraesCS2A01G063500.1 | Wheat | mitochondrion | 30.12 | 33.23 |
TraesCS2D01G061700.1 | Wheat | golgi | 30.31 | 33.05 |
OQU78362 | Sorghum | cytosol | 20.85 | 31.53 |
TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 30.31 | 30.97 |
TraesCS2B01G554300.1 | Wheat | nucleus | 29.92 | 30.75 |
HORVU2Hr1G011400.1 | Barley | cytosol | 21.81 | 28.21 |
HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 22.39 | 26.54 |
PGSC0003DMT400023464 | Potato | plastid | 15.15 | 24.08 |
AT3G60980.1 | Thale cress | mitochondrion | 8.78 | 22.09 |
CDY25062 | Canola | mitochondrion | 7.05 | 20.11 |
CDY33104 | Canola | mitochondrion | 7.05 | 19.84 |
CDX71714 | Canola | cytosol | 4.34 | 18.52 |
Protein Annotations
Gene3D:1.25.40.10 | EntrezGene:102596557 | MapMan:35.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005737 | GO:GO:0005739 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 |
GO:GO:0009793 | GO:GO:0009987 | GO:GO:0051301 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M1CBQ1 |
PFAM:PF01535 | PFAM:PF13041 | EnsemblPlantsGene:PGSC0003DMG400024905 | PGSC:PGSC0003DMG400024905 | EnsemblPlants:PGSC0003DMT400064089 | PFscan:PS51375 |
PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 |
InterPro:TPR-like_helical_dom_sf | UniParc:UPI000294EB74 | RefSeq:XP_015165015.1 | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024905]
Coordinates
chr1:-:79919099..79923290
Molecular Weight (calculated)
114321.0 Da
IEP (calculated)
9.150
GRAVY (calculated)
-0.623
Length
1036 amino acids
Sequence
(BLAST)
(BLAST)
0001: MALYAILLRS LRRSSATAAV FRTQITTSVH NPQNPNFLLP QRSFAFSSAE EAAAERRRRK RRLRIEPPIN ALRRDPLPRG PPSPDDPRSR LPDTTSALVG
0101: PRLNLHNRVQ SLIRAGDLDS AAAVARHAVF SNTRPTVFTC NAIIGAMYRS GRYNDAKALF QYFFNQYNII PNVVSYNHVI VSHCEAGEVD EGLKVYSHII
0201: ENAPFSPSAV TYRHLTKGLI DSDRIAEAVD LLREMLNKGH GADSLVYNNL ILGFLNLGNL EKANELFDEL KERCTVYDGV VNATFMDWFF KQGKVKEAME
0301: SYRSLLDKKY RMVPATCNVL LEVLLRHGRE TEAWALFDAM LDDHTPPTFQ AVNSDTFNLI VNECFRLGKV SEALETFKKV GKGLKTRPFA MDVAGYNNMI
0401: TKLSELEMME EAEKYYMELC NKSLSPDVTT YRTMIEAYVK MDNVEGTLEK YTKMVEAGLR VIPVYAEKWF NFLIEKGKVA ECVPILTKMG EREPKPDVTT
0501: YDIVIRALCG EGNYDASSNL VIQTINYGVG LTSSLREFLL ESFGNQGRRE EIERVFATKP TYIPPSTPPR GQVPWLSQLP RQLPGTSRAA GQQTPPASLS
0601: SQVQGRPSAL NSTWQQNSPP SFVGGQQQAS SPSFIGGQGS SQMQGQQSAP NPRWQQASPP SFVAGQGSHQ LQGQQADPNL RWQQASPPTF VAGQGSHQMQ
0701: GQQSAPNPRW QQASPPSYTA GQGSQQMQGQ QSEPNPRWQQ ASPPSFVAGQ GSHQMQGQQS EPNPRWQQAS PPSFVAGQGS HQMQGQQSEP NPRWQQASPP
0801: SFVAGQGSHQ MQGQQSAPNP RWQQASPPSF IAGQVPQQMQ GQPSTFARNS HQASPSFIQQ GASPPSFMAG QGSQQMQGQP SAFARNVQQA SQPSFVPQDA
0901: SSHSFMAGRS QQMQGQPSGF THVSQWSSPP TYMAGQGGQH QNQGPPSGFT QTPYKEASPY SMDGQRAHSM QGLTSGPVHT PLNEISHTSQ SVRGPASAFA
1001: HVPGQYVRHQ ATEKASSQGD NIEQYQYPEV ARQGRM
0101: PRLNLHNRVQ SLIRAGDLDS AAAVARHAVF SNTRPTVFTC NAIIGAMYRS GRYNDAKALF QYFFNQYNII PNVVSYNHVI VSHCEAGEVD EGLKVYSHII
0201: ENAPFSPSAV TYRHLTKGLI DSDRIAEAVD LLREMLNKGH GADSLVYNNL ILGFLNLGNL EKANELFDEL KERCTVYDGV VNATFMDWFF KQGKVKEAME
0301: SYRSLLDKKY RMVPATCNVL LEVLLRHGRE TEAWALFDAM LDDHTPPTFQ AVNSDTFNLI VNECFRLGKV SEALETFKKV GKGLKTRPFA MDVAGYNNMI
0401: TKLSELEMME EAEKYYMELC NKSLSPDVTT YRTMIEAYVK MDNVEGTLEK YTKMVEAGLR VIPVYAEKWF NFLIEKGKVA ECVPILTKMG EREPKPDVTT
0501: YDIVIRALCG EGNYDASSNL VIQTINYGVG LTSSLREFLL ESFGNQGRRE EIERVFATKP TYIPPSTPPR GQVPWLSQLP RQLPGTSRAA GQQTPPASLS
0601: SQVQGRPSAL NSTWQQNSPP SFVGGQQQAS SPSFIGGQGS SQMQGQQSAP NPRWQQASPP SFVAGQGSHQ LQGQQADPNL RWQQASPPTF VAGQGSHQMQ
0701: GQQSAPNPRW QQASPPSYTA GQGSQQMQGQ QSEPNPRWQQ ASPPSFVAGQ GSHQMQGQQS EPNPRWQQAS PPSFVAGQGS HQMQGQQSEP NPRWQQASPP
0801: SFVAGQGSHQ MQGQQSAPNP RWQQASPPSF IAGQVPQQMQ GQPSTFARNS HQASPSFIQQ GASPPSFMAG QGSQQMQGQP SAFARNVQQA SQPSFVPQDA
0901: SSHSFMAGRS QQMQGQPSGF THVSQWSSPP TYMAGQGGQH QNQGPPSGFT QTPYKEASPY SMDGQRAHSM QGLTSGPVHT PLNEISHTSQ SVRGPASAFA
1001: HVPGQYVRHQ ATEKASSQGD NIEQYQYPEV ARQGRM
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.