CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71219
CDX71220
CDY36631
CDY37227
CDY62312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	CDX71219	AT2G15400.1	16489121
AT1G10270.1	CDX71220	AT2G15400.1	16489121
AT1G10270.1	CDY36631	AT2G15400.1	16489121
AT1G10270.1	CDY37227	AT2G15400.1	16489121
AT1G10270.1	CDY62312	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34898	Canola	mitochondrion	93.08	74.0
CDX94912	Canola	mitochondrion	79.68	65.34
CDX93444	Canola	mitochondrion	71.72	63.99
AT1G10270.1	Thale cress	mitochondrion	81.15	60.35
CDY20645	Canola	mitochondrion	72.9	60.29
CDY31037	Canola	mitochondrion	60.82	51.18
VIT_12s0035g01700.t01	Wine grape	mitochondrion	36.38	39.39
CDY21873	Canola	cytosol	5.6	35.19
OQU78362	Sorghum	cytosol	30.49	30.22
GSMUA_Achr10P...	Banana	mitochondrion, plastid	27.39	30.1
CDY09648	Canola	extracellular, mitochondrion, plastid	16.05	28.91
CDY25066	Canola	cytosol	5.45	28.68
Solyc01g103160.2.1	Tomato	nucleus	36.97	25.77
Zm00001d032900_P001	Maize	mitochondrion	30.63	25.58
TraesCS2A01G524300.1	Wheat	mitochondrion	30.49	25.03
HORVU2Hr1G011400.1	Barley	cytosol	29.31	24.84
OQU93028	Sorghum	mitochondrion	31.37	24.34
TraesCS2D01G527300.1	Wheat	mitochondrion	30.04	23.89
Os05t0365500-01	Rice	nucleus	31.81	23.71
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	30.49	23.68
PGSC0003DMT400064089	Potato	mitochondrion, plastid	35.94	23.55
TraesCS2A01G063500.1	Wheat	mitochondrion	30.93	22.36
TraesCS2D01G061700.1	Wheat	golgi	31.22	22.32
TraesCS2B01G554300.1	Wheat	nucleus	32.4	21.83
CDX95410	Canola	cytosol	1.62	21.15
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	31.22	20.91
CDY00193	Canola	plastid	15.17	17.73
CDX71714	Canola	cytosol	6.33	17.7
CDX83077	Canola	mitochondrion, plastid	15.32	16.56
CDX86985	Canola	mitochondrion	14.29	16.47
CDX95653	Canola	mitochondrion	9.57	16.21
CDX68524	Canola	cytosol, mitochondrion, plastid	14.73	15.92
CDY53878	Canola	mitochondrion	3.24	15.28
CDY08118	Canola	plastid	13.4	15.27
CDY25062	Canola	mitochondrion	8.1	15.15
CDY33104	Canola	mitochondrion	8.1	14.95
CDY37773	Canola	mitochondrion	9.28	14.82
CDX80067	Canola	mitochondrion	9.13	14.25
CDY05914	Canola	cytosol	3.09	13.91
CDY10671	Canola	mitochondrion	7.95	13.53
CDX80068	Canola	mitochondrion	9.57	12.29
CDY37774	Canola	mitochondrion	9.57	11.82
CDY53879	Canola	cytosol	2.36	8.89
CDY05913	Canola	cytosol	6.04	8.42

Protein Annotations

EnsemblPlants:CDY65945	EnsemblPlantsGene:GSBRNA2T00051051001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY65945	ProteinID:CDY65945.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE8755	UniProt:A0A078JHG6	MapMan:35.1	:

Description

BnaCnng49160DBnaCnng49160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHG6]

Coordinates

chrLK035015:-:14406..16548

Molecular Weight (calculated)

75942.1 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.753

Length

679 amino acids

Sequence
(BLAST)

001: MYRSKRYADS ISLFEYFFKQ SNIVPNVVSY NQIINAHCDE GHVEEALEVY RYILANAPFA PSSVTYRHLT KGLVQAGRIG EAVSLVREML SKGQAADSVV
101: YSNVIRGYLD LGDLDKANEF FDELKSKCTV YDGIVHGTFM EYWFEKGNDK EGMESYRSLL DKKFRMHPHT GNVLLEVFLK YGKKSEAWGL FNEMLDNHTP
201: PNILSVNSET ISIMVNECFK MGEFGEAIET FKKVGRNPTS RPFVMDYLGY SNIVTRFCEH GMLPEAERFF AESVSKSLPP DAPSHRAMID AYLKAERVED
301: AVKMLNRMVD VNLRVVAEFG TRVFGELIRN GKVTECAEVL TKMGEREPKP DPSVYDVVVR GLCEGDALDQ AKDIVSQMVG YGVGVAPVLR ELIIETFEKA
401: GRREEIEKTL NTVSRPVRNS SQSGYTAPRV PAVLGVTPAA PQQPRDRVPW TSHGASIPNS GGASGTVGQT AGGTYKANNG QNPSWSNTSV NQQQKSWSNQ
501: TAVQQPPSWS SQAPGYQQQQ SWSQQPAWSS PSGQQQSWSN QTPGQQQQWA NQYTGHQQSW SNQTTGQQKP WTNQNTGHQQ YQNTGHHQQP WGNQTPGQQQ
601: QWTNQTAGQH SAWTGQQQQW SNQTASPQQS QWSNPSSGQV ANQAQWSNSG NSHLPQRQET ESSHGWQDGE DKKVVESSN

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.