CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93444
CDX94912
CDY20645
CDY31037
CDY34898
CDY65945

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	CDX93444	AT1G10270.1	16489121
AT2G15400.1	CDX94912	AT1G10270.1	16489121
AT2G15400.1	CDY20645	AT1G10270.1	16489121
AT2G15400.1	CDY31037	AT1G10270.1	16489121
AT2G15400.1	CDY34898	AT1G10270.1	16489121
AT2G15400.1	CDY65945	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015218.1-P	Field mustard	nucleus	94.33	83.39
CDY36631	Canola	nucleus	94.33	83.39
CDY62312	Canola	nucleus	87.23	77.36
CDY37227	Canola	nucleus	87.23	76.64
AT2G15430.1	Thale cress	nucleus	86.52	76.49
AT2G15400.1	Thale cress	nucleus	78.72	69.59
KRG89365	Soybean	nucleus	76.95	67.81
KRH50412	Soybean	nucleus	76.6	67.71
VIT_03s0180g00050.t01	Wine grape	nucleus	75.89	67.3
HORVU7Hr1G115770.2	Barley	nucleus	39.72	66.27
Solyc05g010300.2.1	Tomato	nucleus	72.34	63.95
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	70.92	63.29
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	70.21	62.86
TraesCS7D01G509400.1	Wheat	nucleus	69.86	62.54
GSMUA_Achr3P13120_001	Banana	cytosol	30.5	61.43
Os09t0110400-02	Rice	nucleus	71.63	61.21
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	71.28	60.91
TraesCS5A01G160900.1	Wheat	plastid	70.57	60.12
TraesCS5B01G158300.1	Wheat	nucleus	70.57	60.12
EER98576	Sorghum	nucleus	69.86	60.06
CDX71220	Canola	nucleus	91.84	58.33
Zm00001d005295_P001	Maize	extracellular	70.21	56.57
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	70.57	54.82
HORVU5Hr1G050250.6	Barley	nucleus	70.21	53.66
GSMUA_Achr3P13130_001	Banana	cytosol	12.06	29.57
CDY40501	Canola	cytosol	25.89	19.21
CDY54765	Canola	cytosol	25.89	19.11
CDY24544	Canola	cytosol	25.18	17.79
CDY34129	Canola	cytosol	24.11	17.04

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	GO:A0A078C4Y4
EnsemblPlants:CDX71219	ProteinID:CDX71219	ProteinID:CDX71219.1	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00144799001	InterPro:IPR036603	InterPro:IPR036643
PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2	InterPro:RBP11-like
InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI0004EDCFDE	:

Description

BnaC07g04980D

Coordinates

chrLK031792:+:1383219..1384638

Molecular Weight (calculated)

31731.4 Da

IEP (calculated)

4.280

GRAVY (calculated)

-0.359

Length

282 amino acids

Sequence
(BLAST)

001: MDSGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFRLS AKCVTDQTLD VTSKDLYSAD PTVTPVDFGD SSGADSSEQR GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLTDDEKI DLIESSPTKV FDFDAVTRQV VVVDPEAYTY DEEVIKKAEA MGKQGLIEIR PKDDSFMDFY SHFEGDQEEL AQ

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.