Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | OQU78362 | AT1G10270.1 | 16489121 |
| AT2G15400.1 | OQU93028 | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005295_P001 | Maize | extracellular | 95.43 | 89.43 |
| Os09t0110400-02 | Rice | nucleus | 88.72 | 88.18 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 81.4 | 84.49 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 80.49 | 83.81 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 80.18 | 83.49 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 84.15 | 83.38 |
| TraesCS5A01G160900.1 | Wheat | plastid | 83.84 | 83.08 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 40.85 | 79.29 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 84.15 | 76.03 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 83.23 | 73.98 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 71.34 | 73.58 |
| CDY37227 | Canola | nucleus | 71.04 | 72.59 |
| CDY62312 | Canola | nucleus | 70.12 | 72.33 |
| Bra039839.1-P | Field mustard | nucleus | 70.73 | 72.27 |
| KRH50412 | Soybean | nucleus | 70.12 | 72.1 |
| KRG89365 | Soybean | nucleus | 70.12 | 71.88 |
| Bra015218.1-P | Field mustard | nucleus | 69.51 | 71.47 |
| CDY36631 | Canola | nucleus | 69.51 | 71.47 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 71.65 | 71.21 |
| Solyc05g010300.2.1 | Tomato | nucleus | 68.9 | 70.85 |
| AT2G15430.1 | Thale cress | nucleus | 68.6 | 70.53 |
| CDX71219 | Canola | nucleus | 60.06 | 69.86 |
| AT2G15400.1 | Thale cress | nucleus | 63.72 | 65.52 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 26.52 | 62.14 |
| CDX71220 | Canola | nucleus | 62.2 | 45.95 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 12.8 | 36.52 |
| KXG29694 | Sorghum | cytosol | 27.13 | 24.05 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | EntrezGene:8063422 |
| UniProt:C5X7D7 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | EnsemblPlants:EER98576 | ProteinID:EER98576 |
| ProteinID:EER98576.1 | GO:GO:0001055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 |
| InterPro:IPR036603 | InterPro:IPR036643 | PFAM:PF01000 | PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 |
| PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf | SMART:SM00662 | EnsemblPlantsGene:SORBI_3002G145000 | SUPFAM:SSF55257 |
| SUPFAM:SSF56553 | unigene:Sbi.1701 | UniParc:UPI0001A84272 | RefSeq:XP_002462055.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:27575754..27582174
Molecular Weight (calculated)
36373.1 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.308
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPVGASYQ RFPRVRIRDL KDDYAKFELR DTDASMANAL RRVMIAEVPT VAIDLVEIEV NSSVLNDEFI AHRLGLIPLT SAAAMQMRFS RDCDACDGDG
101: SCEYCSVEFH LAARATDSDQ TLEVTSNDLR SMDPKVCPVD QARAYQQALG GTDPFGANTS NENRGILIVK LRRGQELRLR AIARKGIGKD HAKWSPAATV
201: TFMYEPDIRI NEELMETLTV EERRRLIESS PTKVFKLDSA NQVVVDNAEA YTYDDEVIKH AEALGKPGLV EINAKEDSFI FTVETTGAIT AYELIMNAIT
301: VLRQKLDAVR LQDDDGDLGE LGAHLGGP
101: SCEYCSVEFH LAARATDSDQ TLEVTSNDLR SMDPKVCPVD QARAYQQALG GTDPFGANTS NENRGILIVK LRRGQELRLR AIARKGIGKD HAKWSPAATV
201: TFMYEPDIRI NEELMETLTV EERRRLIESS PTKVFKLDSA NQVVVDNAEA YTYDDEVIKH AEALGKPGLV EINAKEDSFI FTVETTGAIT AYELIMNAIT
301: VLRQKLDAVR LQDDDGDLGE LGAHLGGP
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.