Factsheet for GSMUA_Achr3P13120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	GSMUA_Achr10P...	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G115770.2	Barley	nucleus	47.86	39.65
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	75.0	31.82
CDX71219	Canola	nucleus	61.43	30.5
AT2G15430.1	Thale cress	nucleus	63.57	27.9
CDY62312	Canola	nucleus	62.86	27.67
KRH50412	Soybean	nucleus	62.14	27.27
VIT_03s0180g00050.t01	Wine grape	nucleus	61.43	27.04
Bra015218.1-P	Field mustard	nucleus	61.43	26.96
CDY36631	Canola	nucleus	61.43	26.96
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	60.71	26.9
KRG89365	Soybean	nucleus	61.43	26.88
Bra039839.1-P	Field mustard	nucleus	61.43	26.79
CDY37227	Canola	nucleus	61.43	26.79
TraesCS7D01G509400.1	Wheat	nucleus	60.0	26.67
Os09t0110400-02	Rice	nucleus	62.86	26.67
EER98576	Sorghum	nucleus	62.14	26.52
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	59.29	26.35
Solyc05g010300.2.1	Tomato	nucleus	60.0	26.33
TraesCS5B01G158300.1	Wheat	nucleus	60.71	25.68
TraesCS5A01G160900.1	Wheat	plastid	60.0	25.38
Zm00001d005295_P001	Maize	extracellular	62.86	25.14
AT2G15400.1	Thale cress	nucleus	55.71	24.45
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	60.0	23.14
HORVU5Hr1G050250.6	Barley	nucleus	60.0	22.76
CDX71220	Canola	nucleus	63.57	20.05
GSMUA_Achr1P19210_001	Banana	cytosol	28.57	10.84
GSMUA_Achr7P06070_001	Banana	nucleus	25.71	9.73
GSMUA_Achr3P13130_001	Banana	cytosol	2.86	3.48

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	MapMan:35.1	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert
GO:GO:0003674	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr3G13120_001	EnsemblPlants:GSMUA_Achr3P13120_001	EnsemblPlants:GSMUA_Achr3T13120_001	InterPro:IPR036643	UniProt:M0SE79
PFAM:PF01000	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF56553
UniParc:UPI000294FF9A	:	:	:	:	:

Description

DNA-directed RNA polymerase II subunit RPB3-A [Source:GMGC_GENE;Acc:GSMUA_Achr3G13120_001]

Coordinates

chr3:+:9630803..9632918

Molecular Weight (calculated)

15304.1 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.072

Length

140 amino acids

Sequence
(BLAST)

001: MPVEIEVNSS VLDDEFIAHR LGLIPLTSDD AMPVRFSRDC DACDGDGFCE FCSVEFFLSV RSDSDHTLDV TSADLHTTNP RVCPVDVAAK APSSTEQKYS
101: LSLPIIFYST SGVIIVKLRR GQELKLKAVA TKGIGKDHPE

Best Arabidopsis Sequence Match ( AT2G15430.2 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQI ALLSSLGELR QSSE

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.