Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018451.1-P | |
| Bra019952.1-P | |
| Bra031706.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | Bra018451.1-P | AT1G10270.1 | 16489121 |
| AT2G15400.1 | Bra019952.1-P | AT1G10270.1 | 16489121 |
| AT2G15400.1 | Bra031706.1-P | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36631 | Canola | nucleus | 100.0 | 100.0 |
| CDX71219 | Canola | nucleus | 83.39 | 94.33 |
| Bra039839.1-P | Field mustard | nucleus | 93.73 | 93.15 |
| AT2G15430.1 | Thale cress | nucleus | 92.16 | 92.16 |
| AT2G15400.1 | Thale cress | nucleus | 83.39 | 83.39 |
| KRG89365 | Soybean | nucleus | 82.76 | 82.5 |
| KRH50412 | Soybean | nucleus | 82.45 | 82.45 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 82.13 | 82.39 |
| Solyc05g010300.2.1 | Tomato | nucleus | 78.37 | 78.37 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 71.79 | 72.47 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 71.16 | 72.06 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 70.22 | 71.11 |
| Os09t0110400-02 | Rice | nucleus | 73.35 | 70.91 |
| GSMUA_Achr1P26120_001 | Banana | mitochondrion, nucleus | 73.04 | 70.61 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 72.41 | 69.79 |
| TraesCS5A01G160900.1 | Wheat | plastid | 72.41 | 69.79 |
| EER98576 | Sorghum | nucleus | 71.47 | 69.51 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 35.42 | 66.86 |
| Zm00001d005295_P001 | Maize | extracellular | 71.47 | 65.14 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 72.1 | 63.36 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 71.47 | 61.79 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 26.96 | 61.43 |
| CDX71220 | Canola | nucleus | 83.07 | 59.68 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 12.54 | 34.78 |
| Bra040351.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 23.82 | 22.16 |
| Bra027125.1-P | Field mustard | cytosol | 25.71 | 21.47 |
| Bra031493.1-P | Field mustard | cytosol | 25.08 | 20.05 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | EnsemblPlantsGene:Bra015218 |
| EnsemblPlants:Bra015218.1 | EnsemblPlants:Bra015218.1-P | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 | InterPro:IPR036643 | UniProt:M4DFE5 | PFAM:PF01000 |
| PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf |
| SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI000254464F | : | : |
Description
AT2G15430 (E=1e-167) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
Coordinates
chrA10:-:3338840..3340156
Molecular Weight (calculated)
35430.0 Da
IEP (calculated)
4.353
GRAVY (calculated)
-0.266
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGATYQRF PKVKIRELKD DYAKFELRDT DVSMANALRR VMISEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFRLS AKCVTDQTLD VTSKDLYSAD PTVTPVDFGD SSGADSSEQR GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLTDDEKI DLIESSPTKV FDFDAVTRQV VVVDPEAYTY DEEVIKKAEA MGKQGLIEIR PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: EFCSVEFRLS AKCVTDQTLD VTSKDLYSAD PTVTPVDFGD SSGADSSEQR GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLTDDEKI DLIESSPTKV FDFDAVTRQV VVVDPEAYTY DEEVIKKAEA MGKQGLIEIR PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.