Factsheet for TraesCS7B01G435800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G063500.1
TraesCS2A01G524300.1
TraesCS2B01G076200.1
TraesCS2B01G554300.1
TraesCS2D01G061700.1
TraesCS2D01G527300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15400.1	TraesCS2A01G063500.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2A01G524300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G076200.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2B01G554300.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G061700.1	AT1G10270.1	16489121
AT2G15400.1	TraesCS2D01G527300.1	AT1G10270.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	95.56	95.25
TraesCS7D01G509400.1	Wheat	nucleus	94.92	94.92
TraesCS5B01G158300.1	Wheat	nucleus	92.06	87.61
Os09t0110400-02	Rice	nucleus	87.62	83.64
HORVU7Hr1G115770.2	Barley	nucleus	44.44	82.84
EER98576	Sorghum	nucleus	83.81	80.49
Zm00001d005295_P001	Maize	extracellular	83.17	74.86
VIT_03s0180g00050.t01	Wine grape	nucleus	74.6	73.9
KRG89365	Soybean	nucleus	74.92	73.75
KRH50412	Soybean	nucleus	74.6	73.67
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	75.87	72.42
CDY62312	Canola	nucleus	72.38	71.7
Bra039839.1-P	Field mustard	nucleus	73.02	71.65
CDY37227	Canola	nucleus	72.7	71.34
CDY36631	Canola	nucleus	72.06	71.16
Bra015218.1-P	Field mustard	nucleus	72.06	71.16
Solyc05g010300.2.1	Tomato	nucleus	71.75	70.85
AT2G15430.1	Thale cress	nucleus	71.11	70.22
CDX71219	Canola	nucleus	62.86	70.21
AT2G15400.1	Thale cress	nucleus	67.94	67.08
GSMUA_Achr3P13120_001	Banana	cytosol	26.35	59.29
GSMUA_Achr3P13130_001	Banana	cytosol	17.46	47.83
CDX71220	Canola	nucleus	65.08	46.17
TraesCS1B01G250000.1	Wheat	cytosol	27.3	24.23

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS
InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF2
InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	EnsemblPlantsGene:TraesCS7B01G435800
EnsemblPlants:TraesCS7B01G435800.1	TIGR:cd07031	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:-:702325133..702333299

Molecular Weight (calculated)

34805.3 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.224

Length

315 amino acids

Sequence
(BLAST)

001: MERPAAGASY QRFPRVRIRE LRDEYAKFEL RDTDASVANA LRRVMIAEVP TVAIDLVEIE SNSSVLTDEF IAHRLGLIPL TSSAAMAMRL SRDCDACDGD
101: GSCEYCSVEF HLAARATDSG QTLEVTAMDL RSTDPKVCPV DQADAAGDHR GILIVKLRRG QELRLRAIAR KGIGKDHAKW SPAATVTFMY EPDIHINEEL
201: METLTLEEKQ SWVESSPTKV FDIDPVTQQV TVVDPEAYTY DDEVIKKAEA MGKPGLVEIN AKEDSFVFTV ETTGAITAYE LIMNAITILR QKLDAIRLQD
301: DDGDLGELDA HLVGG

Best Arabidopsis Sequence Match ( AT2G15400.1 )
(BLAST)

001: MDGVTYQRFP TVKIRELKDD YAKFELRETD VSMANALRRV MISEVPTMAI HLVKIEVNSS VLNDEFIAQR LSLIPLTSER AMSMRFCQDC EDCNGDEHCE
101: FCSVEFPLSA KCVTDQTLDV TSRDLYSADP TVTPVDFTSN SSTSDSSEHK GIIIAKLRRG QELKLKALAR KGIGKDHAKW SPAATVTYMY EPDIIINEEM
201: MNTLTDEEKI DLIESSPTKV FGIDPVTGQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIH PKHDSFVFTV ESTGALKASQ LVLNAIDILK QKLDAIRLSD
301: NTVEADDQFG ELGAHMREG

Arabidopsis Description

NRPD3BDNA-directed RNA polymerase II, third largest subunit [Source:UniProtKB/TrEMBL;Acc:Q0WRA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.