Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G15400.1 | GSMUA_Achr10P... | AT1G10270.1 | 16489121 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 73.94 | 76.73 |
| TraesCS7B01G435800.1 | Wheat | mitochondrion, nucleus | 72.42 | 75.87 |
| KRH50412 | Soybean | nucleus | 73.33 | 75.86 |
| KRG89365 | Soybean | nucleus | 73.33 | 75.62 |
| TraesCS7A01G519700.1 | Wheat | mitochondrion, nucleus | 72.12 | 75.32 |
| Os09t0110400-02 | Rice | nucleus | 75.15 | 75.15 |
| GSMUA_Achr3P13120_001 | Banana | cytosol | 31.82 | 75.0 |
| TraesCS7D01G509400.1 | Wheat | nucleus | 71.52 | 74.92 |
| AT2G15430.1 | Thale cress | nucleus | 70.61 | 73.04 |
| Solyc05g010300.2.1 | Tomato | nucleus | 70.61 | 73.04 |
| CDY36631 | Canola | nucleus | 70.61 | 73.04 |
| Bra015218.1-P | Field mustard | nucleus | 70.61 | 73.04 |
| CDY62312 | Canola | nucleus | 70.3 | 72.96 |
| CDY37227 | Canola | nucleus | 70.91 | 72.9 |
| Bra039839.1-P | Field mustard | nucleus | 70.61 | 72.59 |
| TraesCS5B01G158300.1 | Wheat | nucleus | 72.42 | 72.21 |
| TraesCS5A01G160900.1 | Wheat | plastid | 72.12 | 71.9 |
| EER98576 | Sorghum | nucleus | 71.21 | 71.65 |
| CDX71219 | Canola | nucleus | 60.91 | 71.28 |
| HORVU7Hr1G115770.2 | Barley | nucleus | 35.45 | 69.23 |
| AT2G15400.1 | Thale cress | nucleus | 66.36 | 68.65 |
| Zm00001d005295_P001 | Maize | extracellular | 71.82 | 67.71 |
| TraesCS5D01G165800.2 | Wheat | mitochondrion, nucleus | 72.12 | 65.56 |
| HORVU5Hr1G050250.6 | Barley | nucleus | 72.12 | 64.5 |
| GSMUA_Achr3P13130_001 | Banana | cytosol | 16.97 | 48.7 |
| CDX71220 | Canola | nucleus | 63.64 | 47.3 |
| GSMUA_Achr1P19210_001 | Banana | cytosol | 28.48 | 25.47 |
| GSMUA_Achr7P06070_001 | Banana | nucleus | 25.76 | 22.97 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.1 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS |
| InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr1G26120_001 |
| EnsemblPlants:GSMUA_Achr1P26120_001 | EnsemblPlants:GSMUA_Achr1T26120_001 | InterPro:IPR036603 | InterPro:IPR036643 | UniProt:M0S369 | PFAM:PF01000 |
| PFAM:PF01193 | ScanProsite:PS00446 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF2 | InterPro:RBP11-like | InterPro:RNApol_insert_sf |
| SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI000296ED4B | : | : |
Description
DNA-directed RNA polymerase II subunit RPB3-A [Source:GMGC_GENE;Acc:GSMUA_Achr1G26120_001]
Coordinates
chr1:-:20915045..20926832
Molecular Weight (calculated)
36739.7 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.256
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKMLGGAG ASRTSYQRYP RVRIREMKDD YLKFELRDTD ASMANALRRV MLAEVPTIAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSDD AMSMRFSRDC
101: DACDGDGQCE FCSVEFFLSV RCDSDQTLDV TSADLQSTNP RVCPVDVAAN ALSSAADGYE SAEQKGIIIV KLRRGQELRL RAIARKGIGK DHAKWSPAAT
201: VTFMYEPQIH INEDLMETLT LEDKRSWVES SPTKVFGIDP NTQQLVVIDA EAYTYDDEVI KKAEAMGKPG LIEIYPKEDS FIFTVESTGA IKASHLVINA
301: IDILKQKLDA VRLQDEESDM KELTSHLGNL
101: DACDGDGQCE FCSVEFFLSV RCDSDQTLDV TSADLQSTNP RVCPVDVAAN ALSSAADGYE SAEQKGIIIV KLRRGQELRL RAIARKGIGK DHAKWSPAAT
201: VTFMYEPQIH INEDLMETLT LEDKRSWVES SPTKVFGIDP NTQQLVVIDA EAYTYDDEVI KKAEAMGKPG LIEIYPKEDS FIFTVESTGA IKASHLVINA
301: IDILKQKLDA VRLQDEESDM KELTSHLGNL
001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG
Arabidopsis Description
NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.