CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89365	Soybean	nucleus	97.81	97.5
VIT_03s0180g00050.t01	Wine grape	nucleus	87.46	87.74
CDY62312	Canola	nucleus	83.07	83.33
AT2G15430.1	Thale cress	nucleus	82.76	82.76
Bra015218.1-P	Field mustard	nucleus	82.45	82.45
CDY36631	Canola	nucleus	82.45	82.45
Solyc05g010300.2.1	Tomato	nucleus	82.45	82.45
Bra039839.1-P	Field mustard	nucleus	82.45	81.93
CDY37227	Canola	nucleus	82.13	81.62
AT2G15400.1	Thale cress	nucleus	76.8	76.8
CDX71219	Canola	nucleus	67.71	76.6
TraesCS7A01G519700.1	Wheat	mitochondrion, nucleus	73.98	74.68
TraesCS7B01G435800.1	Wheat	mitochondrion, nucleus	73.67	74.6
TraesCS7D01G509400.1	Wheat	nucleus	73.04	73.97
Os09t0110400-02	Rice	nucleus	76.18	73.64
GSMUA_Achr1P26120_001	Banana	mitochondrion, nucleus	75.86	73.33
TraesCS5B01G158300.1	Wheat	nucleus	74.61	71.9
TraesCS5A01G160900.1	Wheat	plastid	73.98	71.3
EER98576	Sorghum	nucleus	72.1	70.12
HORVU7Hr1G115770.2	Barley	nucleus	35.74	67.46
Zm00001d005295_P001	Maize	extracellular	72.41	66.0
TraesCS5D01G165800.2	Wheat	mitochondrion, nucleus	73.67	64.74
HORVU5Hr1G050250.6	Barley	nucleus	73.67	63.69
GSMUA_Achr3P13120_001	Banana	cytosol	27.27	62.14
CDX71220	Canola	nucleus	70.22	50.45
GSMUA_Achr3P13130_001	Banana	cytosol	15.99	44.35
KRG99212	Soybean	cytosol	8.15	37.14
KRG98458	Soybean	nucleus	29.15	23.97
KRH46412	Soybean	nucleus	29.15	23.66

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100792565	MapMan:15.1.6.1	Gene3D:2.170.120.12	Gene3D:3.30.1360.270
UniProt:A0A0R4J3R4	EMBL:ACUP02004691	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	EnsemblPlantsGene:GLYMA_07G220900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603	InterPro:IPR036643	EnsemblPlants:KRH50412
ProteinID:KRH50412	ProteinID:KRH50412.1	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800
PANTHER:PTHR11800:SF2	InterPro:RBP11-like	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI00019AA9D7	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:39605327..39608533

Molecular Weight (calculated)

35617.4 Da

IEP (calculated)

4.462

GRAVY (calculated)

-0.264

Length

319 amino acids

Sequence
(BLAST)

001: MEGGVSYARM PRVKIRELKD DYAKFELRDT DASIANALRR VMIAEVPTVA IDLVEIEVNS SVLNDEFIAH RLGLIPLTSE RAMSMRFSRD CDACDGDGQC
101: EFCSVEFHLR VKCMTDQTLD VTSKDLYSSD PTVSPVDFSD PSATDSDNNR GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPEIHINEDL
201: METLTLEEKR EWVDSSPTRV FEIDPVTQQV MVVDAEAYTY DDEVLKKAEA MGKPGLVEII ARQDSFIFTV ESTGAVKASQ LVLNAIEILK QKLDAVRLSE
301: DTVEADDQFG ELGAHMRGG

Best Arabidopsis Sequence Match ( AT2G15430.1 )
(BLAST)

001: MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE
101: FCSVEFRLSS KCVTDQTLDV TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW SPAATVTFMY EPDIIINEDM
201: MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD
301: DTVEADDQFG ELGAHMRGG

Arabidopsis Description

NRPB3RPB35.5A [Source:UniProtKB/TrEMBL;Acc:A0A178W202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.