Factsheet for Bra031493.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24544	Canola	cytosol	99.0	99.0
AT1G60620.1	Thale cress	nucleus	72.18	74.81
Bra027125.1-P	Field mustard	cytosol	71.18	74.35
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	58.9	68.51
VIT_19s0015g00780.t01	Wine grape	cytosol	63.16	67.74
KRG99212	Soybean	cytosol	11.78	67.14
KRG98458	Soybean	nucleus	62.91	64.69
Solyc12g015780.1.1	Tomato	nucleus	63.41	64.38
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.41	64.38
GSMUA_Achr1P19210_001	Banana	cytosol	58.9	63.69
KRH46412	Soybean	nucleus	62.41	63.36
TraesCS1D01G238500.1	Wheat	cytosol	55.14	61.97
TraesCS1B01G250000.1	Wheat	cytosol	55.14	61.97
TraesCS1A01G233400.1	Wheat	nucleus	55.14	61.97
GSMUA_Achr7P06070_001	Banana	nucleus	56.64	61.08
Os03t0295400-01	Rice	nucleus	55.89	58.84
Zm00001d054013_P002	Maize	nucleus	54.64	58.6
KXG29694	Sorghum	cytosol	54.14	58.38
Os02t0723600-00	Rice	cytosol	42.11	56.0
HORVU1Hr1G057510.1	Barley	nucleus, plastid	55.64	55.09
Bra015218.1-P	Field mustard	nucleus	20.05	25.08
Bra039839.1-P	Field mustard	nucleus	19.8	24.61

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	EnsemblPlantsGene:Bra031493
EnsemblPlants:Bra031493.1	EnsemblPlants:Bra031493.1-P	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	InterPro:IPR036603
InterPro:IPR036643	UniProt:M4ERR7	PFAM:PF01000	PFAM:PF01193	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13
InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI0002544C90	SEG:seg	:	:	:	:

Description

AT1G60620 (E=1e-145) ATRPAC43 | ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization

Coordinates

chrA01:+:16987763..16989651

Molecular Weight (calculated)

44740.6 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.366

Length

399 amino acids

Sequence
(BLAST)

001: MTTKGEKRIV SEEDKIFAKN FNIMDHPDIP TGLPPHLQLQ RTRVLCKNDA PIHTASVTYS GAYNAVGVDN SVKLENFSEN FKVDVIQLSK DGMELTFDMI
101: GIDAAIANAF RRILLAEFPT MAFEKVFIAN NTSIVQDEVL AQRMGLVPIA ADPKLFEYLS ENDQPNEKNT IVFKLHAKCA KGEGRKKVLT KELIWLPKGS
201: ELVKESGDSN SKPKTYTSFS RSQKESFPEF ADNPISPSYP DILIAKLGPG QEIELEAHAV KGIGKTHAKW SPVATAWYRM LPEVILLGEV EDEDAERLVK
301: ACPENVFDIE DMGNGRKRAT VARPRDCTLC RQCVRPNYGE EVNKGVEEKE WIENVSLRRV KNHFIFKIES TGSLPPDVLF TEAVKILEDK CERVIANLS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.