Factsheet for Solyc12g015780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	97.2	97.2
VIT_19s0015g00780.t01	Wine grape	cytosol	73.79	77.96
KRG99212	Soybean	cytosol	12.21	68.57
TraesCS1B01G250000.1	Wheat	cytosol	61.32	67.89
TraesCS1D01G238500.1	Wheat	cytosol	61.07	67.61
TraesCS1A01G233400.1	Wheat	nucleus	61.07	67.61
GSMUA_Achr7P06070_001	Banana	nucleus	63.61	67.57
GSMUA_Achr1P19210_001	Banana	cytosol	63.36	67.48
KRG98458	Soybean	nucleus	65.65	66.49
AT1G60620.1	Thale cress	nucleus	64.89	66.23
KRH46412	Soybean	nucleus	65.9	65.9
KXG29694	Sorghum	cytosol	61.32	65.14
AT1G60850.4	Thale cress	cytosol	61.07	64.0
CDY54765	Canola	cytosol	62.09	63.87
Bra027125.1-P	Field mustard	cytosol	62.09	63.87
CDY24544	Canola	cytosol	64.38	63.41
Bra031493.1-P	Field mustard	cytosol	64.38	63.41
Os02t0723600-00	Rice	cytosol	48.35	63.33
CDY40501	Canola	cytosol	61.07	63.16
CDY34129	Canola	cytosol	64.12	63.16
Zm00001d054013_P002	Maize	nucleus	59.54	62.9
Os03t0295400-01	Rice	nucleus	60.56	62.8
HORVU1Hr1G057510.1	Barley	nucleus, plastid	62.09	60.55
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	47.33	54.23
Solyc05g010300.2.1	Tomato	nucleus	22.65	27.9

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	ncoils:Coil
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0001054	GO:GO:0001056	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666
GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
InterPro:IPR036603	InterPro:IPR036643	UniProt:K4DD13	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446
PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662
SUPFAM:SSF55257	SUPFAM:SSF56553	EnsemblPlantsGene:Solyc12g015780.1	EnsemblPlants:Solyc12g015780.1.1	UniParc:UPI000276A97D	SEG:seg

Description

No Description!

Coordinates

chr12:-:5775862..5780527

Molecular Weight (calculated)

44016.6 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.312

Length

393 amino acids

Sequence
(BLAST)

001: MGTATENESM DSEGTSTQEE TFTKVSVWDL PDLPKGKLPP HIELQRTRVL CGSLAPTNTE NVNYSGAYAA MGVDNSVRFE QFRDNFKVEI VRLEEDELEF
101: DMIGIDPSLA NAFRRILIAE LPTMAIEKVL IANNTSIIQD EVLAHRLGLI PIKVDPRLFE YMSENDVPNE KNTIVFKLHV RCTKGSDRLR VLSSELKWLP
201: NGSELILGTE HSASSSSAKP KTYTSFSCSQ DTRPEFSDEP IAPKDADIIV AKLGPGQEIE LEAHAVKGMG KTHAKWSPVA TAWYRMLPEV LLLRDIEDDE
301: AEALVKKCPL KVFDIEDIGK GKKRATVARP RACTLCRECI REEGWDKNVA LRRVNDHFIF TIESTGALPP EVLFTEAVKI LEEKCERVIT ELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.