Factsheet for PGSC0003DMT400076609

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g015780.1.1	Tomato	nucleus	97.2	97.2
VIT_19s0015g00780.t01	Wine grape	cytosol	74.05	78.23
TraesCS1D01G238500.1	Wheat	cytosol	61.32	67.89
TraesCS1B01G250000.1	Wheat	cytosol	61.32	67.89
GSMUA_Achr7P06070_001	Banana	nucleus	63.87	67.84
TraesCS1A01G233400.1	Wheat	nucleus	61.07	67.61
KRG98458	Soybean	nucleus	66.67	67.53
GSMUA_Achr1P19210_001	Banana	cytosol	63.36	67.48
KRG99212	Soybean	cytosol	11.96	67.14
KRH46412	Soybean	nucleus	66.92	66.92
AT1G60620.1	Thale cress	nucleus	64.89	66.23
KXG29694	Sorghum	cytosol	61.32	65.14
AT1G60850.4	Thale cress	cytosol	61.32	64.27
Os02t0723600-00	Rice	cytosol	48.85	64.0
CDY54765	Canola	cytosol	62.09	63.87
Bra027125.1-P	Field mustard	cytosol	62.09	63.87
CDY40501	Canola	cytosol	61.32	63.42
CDY24544	Canola	cytosol	64.38	63.41
Bra031493.1-P	Field mustard	cytosol	64.38	63.41
Zm00001d054013_P002	Maize	nucleus	59.8	63.17
CDY34129	Canola	cytosol	64.12	63.16
Os03t0295400-01	Rice	nucleus	60.81	63.06
HORVU1Hr1G057510.1	Barley	nucleus, plastid	62.34	60.79
Bra040351.1-P	Field mustard	cytoskeleton, cytosol, nucleus	47.33	54.23

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:102598359	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1
InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3	InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983
InterPro:IPR036603	InterPro:IPR036643	UniProt:M1CX25	PFAM:PF01000	PFAM:PF01193	EnsemblPlantsGene:PGSC0003DMG400029791
PGSC:PGSC0003DMG400029791	EnsemblPlants:PGSC0003DMT400076609	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13	InterPro:RBP11-like
InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553	UniParc:UPI000294E94A
RefSeq:XP_006344900.1	SEG:seg	:	:	:	:

Description

DNA-directed RNA polymerase I/III subunits [Source:PGSC_GENE;Acc:PGSC0003DMG400029791]

Coordinates

chr12:-:10124083..10128453

Molecular Weight (calculated)

43947.5 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.282

Length

393 amino acids

Sequence
(BLAST)

001: MGTATESESM DSESTSTQEE TFTKVSVWDL PDLPKGKLPP HIELQRTRVL CGSLAPTNTE NVNYSGAYAA MGVDNSVRFE QFRNNFKVEI VRLEEDELEF
101: DMIGIDPSLA NAFRRILIAE LPTMAIEKVL IANNTSIIQD EVLAHRLGLI PIEVDPRLFE YMSENDVPNE KNTIVFKLHA RCTKGSDRLR VLSSELKWLP
201: NGSELILGTE HSASSSSAKP KTYTSFSCSQ DTLPEFSNDP IAPKDADIIV AKLGPGQEIE LEAHAVKGMG KTHAKWSPVA TAWYRMLPEV VLLRDIEDDE
301: AEALVKKCPV KVFDIEDIGK GKKRATVARP RICTLCRECI REEGWDKNVA LRRVNDHFIF TIESTGALPP EVLFTEAVKI LEEKCERVIT ELS

Best Arabidopsis Sequence Match ( AT1G60620.1 )
(BLAST)

001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS

Arabidopsis Description

ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.