Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076609 | Potato | cytoskeleton, cytosol, nucleus | 78.23 | 74.05 |
| Solyc12g015780.1.1 | Tomato | nucleus | 77.96 | 73.79 |
| KRG98458 | Soybean | nucleus | 73.39 | 70.36 |
| KRG99212 | Soybean | cytosol | 13.17 | 70.0 |
| GSMUA_Achr1P19210_001 | Banana | cytosol | 69.35 | 69.92 |
| KRH46412 | Soybean | nucleus | 73.39 | 69.47 |
| GSMUA_Achr7P06070_001 | Banana | nucleus | 67.74 | 68.11 |
| TraesCS1B01G250000.1 | Wheat | cytosol | 64.25 | 67.32 |
| TraesCS1D01G238500.1 | Wheat | cytosol | 63.98 | 67.04 |
| TraesCS1A01G233400.1 | Wheat | nucleus | 63.98 | 67.04 |
| AT1G60620.1 | Thale cress | nucleus | 68.82 | 66.49 |
| Bra027125.1-P | Field mustard | cytosol | 67.74 | 65.97 |
| CDY54765 | Canola | cytosol | 67.74 | 65.97 |
| CDY40501 | Canola | cytosol | 66.67 | 65.26 |
| AT1G60850.4 | Thale cress | cytosol | 65.05 | 64.53 |
| CDY24544 | Canola | cytosol | 67.74 | 63.16 |
| Bra031493.1-P | Field mustard | cytosol | 67.74 | 63.16 |
| Os03t0295400-01 | Rice | nucleus | 64.25 | 63.06 |
| Os02t0723600-00 | Rice | cytosol | 50.81 | 63.0 |
| CDY34129 | Canola | cytosol | 67.2 | 62.66 |
| KXG29694 | Sorghum | cytosol | 62.1 | 62.43 |
| Zm00001d054013_P002 | Maize | nucleus | 62.1 | 62.1 |
| HORVU1Hr1G057510.1 | Barley | nucleus, plastid | 64.52 | 59.55 |
| Bra040351.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 49.46 | 53.64 |
| VIT_03s0180g00050.t01 | Wine grape | nucleus | 24.73 | 28.93 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | EntrezGene:100248046 | wikigene:100248046 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 |
| MapMan:35.1 | ProteinID:CBI39763 | ProteinID:CBI39763.3 | UniProt:D7UAJ8 | InterPro:DNA-dir_RNA_pol_30-40kDasu_CS | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 |
| InterPro:DNA-dir_RNA_pol_insert | EMBL:FN596747 | GO:GO:0001054 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 |
| GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006383 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 |
| InterPro:IPR036643 | EntrezGene:LOC100248046 | wikigene:LOC100248046 | PFAM:PF01000 | PFAM:PF01193 | ScanProsite:PS00446 |
| PANTHER:PTHR11800 | PANTHER:PTHR11800:SF13 | InterPro:RBP11-like | InterPro:RNAPI/II_AC40 | InterPro:RNApol_insert_sf | SMART:SM00662 |
| SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI00019857F6 | ArrayExpress:VIT_19s0015g00780 | EnsemblPlantsGene:VIT_19s0015g00780 | EnsemblPlants:VIT_19s0015g00780.t01 |
| unigene:Vvi.22063 | RefSeq:XP_002270559 | RefSeq:XP_002270559.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr19:-:8915468..8922437
Molecular Weight (calculated)
41783.0 Da
IEP (calculated)
5.638
GRAVY (calculated)
-0.354
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRSPALDMP DVPKGQLPPH IELQRTRVLC NFDAPTHTEN VQYSGAYSSM GVDNSLRMDQ FCNNFRVEVI RLSEDDMEFD MIGIDPSIAN AFRRILIAEL
101: PTMAIEKVLI ANNTSIVQDE VLAHRLGLIP INADPRLFDD LSENDTPNEK NTIVFNLHVR CERGGPRLTV KSNELKWLPH GSEFPLATEN TTSSSTSKPK
201: TYTSFSCSQD SLPEFSDKSI GPKHPDIIIA KLGPGQEIEL EAHAVKGMGK THAKWSPVAT AWYRMLPEVV LLQEIEDEKA EELVKKCPVN VFDIEDIAKG
301: KKKATVARPR ACTLCRECIR GDDWDKHVAI RRVKNHFIFT IESTGALPPE VLFNEAVKVL EDKCERVITE LS
101: PTMAIEKVLI ANNTSIVQDE VLAHRLGLIP INADPRLFDD LSENDTPNEK NTIVFNLHVR CERGGPRLTV KSNELKWLPH GSEFPLATEN TTSSSTSKPK
201: TYTSFSCSQD SLPEFSDKSI GPKHPDIIIA KLGPGQEIEL EAHAVKGMGK THAKWSPVAT AWYRMLPEVV LLQEIEDEKA EELVKKCPVN VFDIEDIAKG
301: KKKATVARPR ACTLCRECIR GDDWDKHVAI RRVKNHFIFT IESTGALPPE VLFNEAVKVL EDKCERVITE LS
001: MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
101: HAGIANAFRR ILLAELPSMA IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG DPRRKVLTSE LKWLPNGSEL
201: IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP
301: KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ PPEVLFNEAV KILEDKCERV ISELS
Arabidopsis Description
ATRPAC43RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.