Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027125.1-P | Field mustard | cytosol | 82.13 | 80.63 |
| CDY54765 | Canola | cytosol | 82.13 | 80.63 |
| CDY40501 | Canola | cytosol | 81.33 | 80.26 |
| AT1G60620.1 | Thale cress | nucleus | 71.2 | 69.35 |
| KRG99212 | Soybean | cytosol | 12.8 | 68.57 |
| VIT_19s0015g00780.t01 | Wine grape | cytosol | 64.53 | 65.05 |
| KRG98458 | Soybean | nucleus | 65.07 | 62.89 |
| KRH46412 | Soybean | nucleus | 64.53 | 61.58 |
| PGSC0003DMT400076609 | Potato | cytoskeleton, cytosol, nucleus | 64.27 | 61.32 |
| Solyc12g015780.1.1 | Tomato | nucleus | 64.0 | 61.07 |
| GSMUA_Achr1P19210_001 | Banana | cytosol | 59.2 | 60.16 |
| TraesCS1D01G238500.1 | Wheat | cytosol | 56.0 | 59.15 |
| TraesCS1A01G233400.1 | Wheat | nucleus | 56.0 | 59.15 |
| TraesCS1B01G250000.1 | Wheat | cytosol | 56.0 | 59.15 |
| GSMUA_Achr7P06070_001 | Banana | nucleus | 57.6 | 58.38 |
| Os03t0295400-01 | Rice | nucleus | 57.87 | 57.26 |
| Os02t0723600-00 | Rice | cytosol | 44.8 | 56.0 |
| KXG29694 | Sorghum | cytosol | 54.67 | 55.41 |
| Zm00001d054013_P002 | Maize | nucleus | 54.93 | 55.38 |
| HORVU1Hr1G057510.1 | Barley | nucleus, plastid | 56.27 | 52.36 |
| AT2G15430.1 | Thale cress | nucleus | 21.87 | 25.71 |
| AT2G15400.1 | Thale cress | nucleus | 21.87 | 25.71 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.170.120.12 | Gene3D:3.30.1360.270 | MapMan:35.1 | EntrezGene:842377 |
| UniProt:A0A178WBU3 | ProteinID:AAG51868.1 | ProteinID:AEE33739.1 | ProteinID:AEE33740.1 | EMBL:AK226775 | ProteinID:ANM57882.1 |
| ArrayExpress:AT1G60850 | EnsemblPlantsGene:AT1G60850 | RefSeq:AT1G60850 | TAIR:AT1G60850 | RefSeq:AT1G60850-TAIR-G | EnsemblPlants:AT1G60850.4 |
| Symbol:ATRPAC42 | Unigene:At.8270 | InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3 | InterPro:DNA-dir_RNA_pol_insert | GO:GO:0001054 | GO:GO:0001056 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 |
| GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006383 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046983 | InterPro:IPR036603 |
| InterPro:IPR036643 | RefSeq:NP_001320360.1 | RefSeq:NP_176282.1 | RefSeq:NP_849833.1 | ProteinID:OAP14965.1 | PFAM:PF01000 |
| PFAM:PF01193 | PANTHER:PTHR11800 | PANTHER:PTHR11800:SF13 | UniProt:Q9C6C2 | InterPro:RBP11-like | InterPro:RNAPI/II_AC40 |
| InterPro:RNApol_insert_sf | SMART:SM00662 | SUPFAM:SSF55257 | SUPFAM:SSF56553 | UniParc:UPI00000A8711 | SEG:seg |
Description
ATRPAC42DNA-directed RNA polymerase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C2]
Coordinates
chr1:-:22397916..22400413
Molecular Weight (calculated)
41782.0 Da
IEP (calculated)
5.473
GRAVY (calculated)
-0.256
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTKAEKQFA KNFNIDDLPD VPAGLPPHLK AQQTRVVSKN NAPAHTASAI YSGTYVSSTE EDDNVKLGNF YDNFKVDVVS LTKTDMEFDM IGIDAAFANA
101: FRRILIAEVP SMAIEKVLIA YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL TSDLKWLPNG SELLRESENK
201: TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE
301: DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE AVKILEAKCE AITDF
101: FRRILIAEVP SMAIEKVLIA YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL TSDLKWLPNG SELLRESENK
201: TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE
301: DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE AVKILEAKCE AITDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.