CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54765	Canola	cytosol	97.37	96.86
AT1G60850.4	Thale cress	cytosol	80.26	81.33
KRG99212	Soybean	cytosol	12.89	70.0
CDY34129	Canola	cytosol	73.16	69.67
CDY24544	Canola	cytosol	72.63	69.17
VIT_19s0015g00780.t01	Wine grape	cytosol	65.26	66.67
KRG98458	Soybean	nucleus	63.68	62.37
GSMUA_Achr1P19210_001	Banana	cytosol	59.74	61.52
PGSC0003DMT400076609	Potato	cytoskeleton, cytosol, nucleus	63.42	61.32
Solyc12g015780.1.1	Tomato	nucleus	63.16	61.07
KRH46412	Soybean	nucleus	63.16	61.07
GSMUA_Achr7P06070_001	Banana	nucleus	58.68	60.27
TraesCS1A01G233400.1	Wheat	nucleus	55.79	59.72
TraesCS1B01G250000.1	Wheat	cytosol	55.79	59.72
TraesCS1D01G238500.1	Wheat	cytosol	55.79	59.72
Os03t0295400-01	Rice	nucleus	57.11	57.26
KXG29694	Sorghum	cytosol	55.53	57.03
Zm00001d054013_P002	Maize	nucleus	55.26	56.45
Os02t0723600-00	Rice	cytosol	44.47	56.33
HORVU1Hr1G057510.1	Barley	nucleus, plastid	56.32	53.1
CDY62312	Canola	nucleus	22.37	26.73
CDY36631	Canola	nucleus	22.11	26.33
CDY37227	Canola	nucleus	22.11	26.17
CDX71219	Canola	nucleus	19.21	25.89
CDX71220	Canola	nucleus	21.58	18.47

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.170.120.12	Gene3D:3.30.1360.270	MapMan:35.1	GO:A0A078HS08
UniProt:A0A078HS08	EnsemblPlants:CDY40501	ProteinID:CDY40501	ProteinID:CDY40501.1	InterPro:DNA-dir_RNA_pol_30-40kDasu_CS	InterPro:DNA-dir_RNA_pol_RpoA/D/Rpb3
InterPro:DNA-dir_RNA_pol_insert	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00069786001	InterPro:IPR036603
InterPro:IPR036643	PFAM:PF01000	PFAM:PF01193	ScanProsite:PS00446	PANTHER:PTHR11800	PANTHER:PTHR11800:SF13
InterPro:RBP11-like	InterPro:RNAPI/II_AC40	InterPro:RNApol_insert_sf	SMART:SM00662	SUPFAM:SSF55257	SUPFAM:SSF56553
UniParc:UPI0004EE0569	SEG:seg	:	:	:	:

Description

BnaC09g14590DBnaC09g14590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS08]

Coordinates

chrLK032472:-:289545..292038

Molecular Weight (calculated)

42397.7 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.207

Length

380 amino acids

Sequence
(BLAST)

001: MVTEEDKIFA KNFRIDDLSD VPAGLPRHRK LKQNRVVSKK DASVDTADAI YSGSYVSSGV DNSVKLENFY KDFKVDVISC TETDMEFDMI GIDAAFANAF
101: RRILIAEVPS MAIEKVLIAY NTSLIVDEVL AHRIGLIPIA ADPRLFEYLT ENDQPNEKNT IVFKLHVKCP KGQPRLQVLT NELQWLPNGS EFLKETGGST
201: STSNSKPKTY TSFSCSQDSL PEFAESPITP TYLDILIAKL SPGQEIELEA HAVKGIGKTH AKWSPVGTAW YRMLPEVVLL GEVEDEKAER LVKVCPQNVF
301: DIEDMGNGRK RATVAQPRNC TLCKECIRDH DLVDLVDLRS VKNHFIFKIE STGSLPPDVL FTEAVKILED KCDLVIADLS

Best Arabidopsis Sequence Match ( AT1G60850.1 )
(BLAST)

001: MVTKAEKQFA KNFNIDDLPD VPAGLPPHLK AQQTRVVSKN NAPAHTASAI YSGTYVSSTE EDDNVKLGNF YDNFKVDVVS LTKTDMEFDM IGIDAAFANA
101: FRRILIAEVP SMAIEKVLIA YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL TSDLKWLPNG SELLRESENK
201: TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE
301: DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE AVKILEAKCE AITDF

Arabidopsis Description

ATRPAC42DNA-directed RNA polymerase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.