CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53879	Canola	cytosol	43.89	97.78
Bra000388.1-P	Field mustard	cytosol	73.32	94.84
CDY53878	Canola	mitochondrion	32.67	90.97
CDY25066	Canola	cytosol	10.72	33.33
CDX71714	Canola	cytosol	19.45	32.1
CDX95410	Canola	cytosol	3.99	30.77
CDX80067	Canola	mitochondrion	31.17	28.74
CDY37773	Canola	mitochondrion	30.17	28.47
CDY33104	Canola	mitochondrion	25.44	27.72
CDY25062	Canola	mitochondrion	24.69	27.27
CDY10671	Canola	mitochondrion	26.43	26.57
CDX80068	Canola	mitochondrion	26.93	20.42
CDY37774	Canola	mitochondrion	26.68	19.45
CDY09648	Canola	extracellular, mitochondrion, plastid	17.71	18.83
GSMUA_Achr10P...	Banana	mitochondrion, plastid	20.2	13.11
CDY20645	Canola	mitochondrion	23.19	11.33
CDX93444	Canola	mitochondrion	21.2	11.17
CDX94912	Canola	mitochondrion	22.69	10.99
CDY31037	Canola	mitochondrion	21.95	10.9
CDY34898	Canola	mitochondrion	23.19	10.89
CDY21873	Canola	cytosol	2.74	10.19
CDY65945	Canola	cytosol	16.21	9.57
Zm00001d032900_P001	Maize	mitochondrion	18.95	9.35
TraesCS2A01G524300.1	Wheat	mitochondrion	18.95	9.19
TraesCS2D01G527300.1	Wheat	mitochondrion	19.2	9.02
OQU93028	Sorghum	mitochondrion	18.95	8.69
Os05t0365500-01	Rice	nucleus	18.95	8.34
TraesCS2D01G061700.1	Wheat	golgi	19.7	8.32
TraesCS2A01G063500.1	Wheat	mitochondrion	19.45	8.31
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	19.7	7.79
TraesCS2B01G554300.1	Wheat	nucleus	19.45	7.74
OQU78362	Sorghum	cytosol	11.97	7.01
CDY00193	Canola	plastid	9.73	6.71
CDX86985	Canola	mitochondrion	9.48	6.45
CDX83077	Canola	mitochondrion, plastid	9.98	6.37
CDX68524	Canola	cytosol, mitochondrion, plastid	9.73	6.21
CDY08118	Canola	plastid	9.23	6.21
HORVU2Hr1G011400.1	Barley	cytosol	10.72	5.37
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	10.72	4.92
CDY05914	Canola	cytosol	1.5	3.97
CDY05913	Canola	cytosol	4.49	3.7

Protein Annotations

EnsemblPlants:CDX95653	EnsemblPlantsGene:GSBRNA2T00101537001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFscan:PS51375	ProteinID:CDX95653	ProteinID:CDX95653.1	SEG:seg	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE67BB	MapMan:35.1	:	:

Description

BnaC03g25340D

Coordinates

chrLK031890:+:477852..479225

Molecular Weight (calculated)

45916.4 Da

IEP (calculated)

7.634

GRAVY (calculated)

-0.185

Length

401 amino acids

Sequence
(BLAST)

001: MFFNRLFAVP IHNHRRFVNT SSLSYLKRLS SNPSSPPMSK TESDPSSIHN RVMMLIKLSN LDAAAEQARL AVFSRGDPFL TAETGVAIID AMRSDRRYSD
101: AYALFHYYAA NSKWDLITNR CSGPIIIALC DEGKLDEALE LYKHFLLRDR PSYRAQLALA QGLVDAGRID EAIDKFYCVD RSVYCIFIRG FLDLGNLERA
201: NQLFQELKLS DDSDSVVQAS AMFMEHWFKQ EMDEKAMECY LSSKEEFSKI YATAANALLK VLLRYGKKTE ACLLFGQMME KDWKPRMFDS ESCNIMVNEC
301: FKLGKISEAV EIFHKSVGTV SYPQLCYRNL ITKFCEQDLL SEAEQFFAEM CSKKFFRPDV PTYRTMMDAY VKKGRVSDAV KTVNQTLDAS LTYIAKKVLV
401: M

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.