Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95410 | Canola | cytosol | 11.11 | 23.08 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 50.0 | 14.32 |
| CDY05914 | Canola | cytosol | 9.26 | 6.62 |
| CDY53879 | Canola | cytosol | 10.19 | 6.11 |
| CDY65945 | Canola | cytosol | 35.19 | 5.6 |
| OQU78362 | Sorghum | cytosol | 33.33 | 5.26 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 29.63 | 5.18 |
| CDY00193 | Canola | plastid | 25.0 | 4.65 |
| HORVU2Hr1G011400.1 | Barley | cytosol | 33.33 | 4.49 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 25.93 | 4.46 |
| CDX86985 | Canola | mitochondrion | 24.07 | 4.41 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 33.33 | 4.35 |
| CDX93444 | Canola | mitochondrion | 30.56 | 4.34 |
| TraesCS2D01G527300.1 | Wheat | mitochondrion | 34.26 | 4.33 |
| CDY34898 | Canola | mitochondrion | 34.26 | 4.33 |
| CDX83077 | Canola | mitochondrion, plastid | 25.0 | 4.3 |
| CDY20645 | Canola | mitochondrion | 32.41 | 4.26 |
| CDX94912 | Canola | mitochondrion | 32.41 | 4.23 |
| CDY31037 | Canola | mitochondrion | 31.48 | 4.21 |
| Zm00001d032900_P001 | Maize | mitochondrion | 31.48 | 4.18 |
| HORVU2Hr1G011350.4 | Barley | cytosol, mitochondrion | 33.33 | 4.12 |
| OQU93028 | Sorghum | mitochondrion | 33.33 | 4.11 |
| CDY08118 | Canola | plastid | 21.3 | 3.86 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 33.33 | 3.83 |
| TraesCS2D01G061700.1 | Wheat | golgi | 33.33 | 3.79 |
| Os05t0365500-01 | Rice | nucleus | 31.48 | 3.73 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 34.26 | 3.67 |
| TraesCS2B01G076200.1 | Wheat | golgi, nucleus, plastid | 33.33 | 3.55 |
| CDY25062 | Canola | mitochondrion | 10.19 | 3.03 |
| CDY10671 | Canola | mitochondrion | 11.11 | 3.01 |
| CDY33104 | Canola | mitochondrion | 10.19 | 2.99 |
| CDY37773 | Canola | mitochondrion | 11.11 | 2.82 |
| CDX80067 | Canola | mitochondrion | 11.11 | 2.76 |
| CDX95653 | Canola | mitochondrion | 10.19 | 2.74 |
| CDX80068 | Canola | mitochondrion | 10.19 | 2.08 |
| CDY37774 | Canola | mitochondrion | 10.19 | 2.0 |
| CDY05913 | Canola | cytosol | 8.33 | 1.85 |
| CDY53878 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY25066 | Canola | cytosol | 0.0 | 0.0 |
| CDX71714 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY21873 | EnsemblPlantsGene:GSBRNA2T00018179001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFscan:PS51375 | ProteinID:CDY21873 | ProteinID:CDY21873.1 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| UniParc:UPI0004EE99E7 | UniProt:A0A078GAX7 | MapMan:35.1 | : | : | : |
Description
BnaC01g35750DBnaC01g35750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAX7]
Coordinates
chrLK032125:-:429857..430183
Molecular Weight (calculated)
12288.8 Da
IEP (calculated)
8.692
GRAVY (calculated)
-0.318
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVNECFDVG RFGDAVNVFN KAKATLQYGL PVEAYRNIIT RLCQNGRLSD AETMFNGLVK EQGYHKPDVE TYKALIRAYV ESSRVEDAVQ TSNKMMASKL
101: HRATQLFF
101: HRATQLFF
001: MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g60980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LEX5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.